Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3918

Experiment: RCH2 grown on a colony of ecoli

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2 grown on a colony of ecoli
4,085,489	+		Psest_3916	0.67	+1.7
4,085,489	+		Psest_3916	0.67	+1.7
4,085,489	+		Psest_3916	0.67	+1.0
4,085,489	+		Psest_3916	0.67	+0.9
4,085,489	+		Psest_3916	0.67	-1.3
4,085,489	+		Psest_3916	0.67	+2.4
4,085,489	+		Psest_3916	0.67	-1.4
4,085,489	+		Psest_3916	0.67	+1.2
4,085,489	+		Psest_3916	0.67	-1.1
4,085,489	+		Psest_3916	0.67	+0.4
4,085,489	+		Psest_3916	0.67	+0.6
4,085,489	+		Psest_3916	0.67	+2.8
4,085,490	-		Psest_3916	0.67	+0.2
4,085,490	-		Psest_3916	0.67	-0.4
4,085,490	-		Psest_3916	0.67	+0.7
4,085,490	-		Psest_3916	0.67	+0.9
4,085,505	+		Psest_3916	0.69	-1.2
4,085,505	+		Psest_3916	0.69	-0.7
4,085,505	+		Psest_3916	0.69	+2.5
4,085,505	+		Psest_3916	0.69	+0.1
4,085,505	+		Psest_3916	0.69	-0.6
4,085,505	+		Psest_3916	0.69	-0.7
4,085,505	+		Psest_3916	0.69	+0.3
4,085,505	+		Psest_3916	0.69	-1.2
4,085,505	+		Psest_3916	0.69	-1.3
4,085,505	+		Psest_3916	0.69	-1.9
4,085,505	+		Psest_3916	0.69	-1.2
4,085,506	-		Psest_3916	0.70	+0.9
4,085,506	-		Psest_3916	0.70	+2.8
4,085,506	-		Psest_3916	0.70	+1.8
4,085,506	-		Psest_3916	0.70	-0.6
4,085,506	-		Psest_3916	0.70	+0.4
4,085,508	+		Psest_3916	0.70	-2.4
4,085,508	+		Psest_3916	0.70	-0.5
4,085,508	+		Psest_3916	0.70	+1.8
4,085,508	+		Psest_3916	0.70	+0.2
4,085,508	+		Psest_3916	0.70	-0.8
4,085,509	-		Psest_3916	0.70	-1.8
4,085,509	-		Psest_3916	0.70	-0.1
4,085,509	-		Psest_3916	0.70	+2.3
4,085,509	-		Psest_3916	0.70	+0.8
4,085,509	-		Psest_3916	0.70	-2.6
4,085,509	-		Psest_3916	0.70	-2.3
4,085,509	-		Psest_3916	0.70	-1.9
4,085,536	+		Psest_3916	0.74	+0.4
4,085,537	-		Psest_3916	0.74	-2.6
4,085,537	-		Psest_3916	0.74	+2.3
4,085,555	+		Psest_3916	0.77	-1.2
4,085,556	-		Psest_3916	0.77	-1.2
4,085,562	+		Psest_3916	0.78	+1.3
4,085,562	+		Psest_3916	0.78	+0.1
4,085,562	+		Psest_3916	0.78	+0.8
4,085,563	-		Psest_3916	0.78	+1.3
4,085,563	-		Psest_3916	0.78	-0.5
4,085,656	-				+0.8
4,085,746	+				+0.5
4,085,746	+				-2.5
4,085,746	+				-1.6
4,085,746	+				-0.4
4,085,747	-				+0.5
4,085,747	-				+2.0
4,085,747	-				-0.2
4,085,747	-				+0.4
4,085,747	-				+0.7
4,085,747	-				-1.1
4,085,747	-				-1.1
4,085,747	-				+2.7
4,085,747	-				-1.8
4,085,747	-				+1.6
4,085,747	-				-1.9
4,085,747	-				-0.1
4,085,752	+				-0.7
4,085,752	+				+2.0
4,085,752	+				+3.6
4,085,752	+				+1.0
4,085,752	+				-0.4
4,085,752	+				-1.8
4,085,752	+				-1.3
4,085,752	+				-3.5
4,085,752	+				-2.7
4,085,752	+				-0.9
4,085,752	+				+1.3
4,085,752	+				+0.3
4,085,752	+				+0.1
4,085,752	+				+2.3
4,085,752	+				+1.8
4,085,753	-				-1.7
4,085,753	-				+1.0
4,085,753	-				+0.5
4,085,753	-				-0.1
4,085,753	-				-2.5
4,085,753	-				+0.1
4,085,753	-				+0.7
4,085,753	-				-1.3
4,085,753	-				-2.8
4,085,753	-				+1.0
4,085,753	-				+1.0
4,085,753	-				+1.1
4,085,753	-				-2.0
4,085,753	-				-0.1
4,085,753	-				+1.6
4,085,753	-				-2.4
4,085,753	-				+1.1
4,085,753	-				-2.9
4,085,753	-				+0.0
4,085,753	-				+0.1
4,085,753	-				+0.6
4,085,753	-				+0.8
4,085,753	-				-2.4
4,085,753	-				+0.9
4,085,753	-				-3.2
4,085,753	-				-1.4
4,085,753	-				+0.2
4,085,753	-				+1.7
4,085,753	-				+0.4
4,085,753	-				-0.9
4,085,757	-				-0.7
4,085,757	-				+2.1
4,085,757	-				-2.2
4,085,953	+				+3.0
4,085,953	+				+1.1
4,085,953	+				+4.5
4,085,954	-				+1.3
4,085,957	+				-1.4
4,085,957	+				+1.4
4,085,986	-				-1.4
4,085,988	-				+3.7
4,086,076	+				-1.7
4,086,077	-				-2.1
4,086,077	-				+0.5
4,086,077	-				-2.9
4,086,137	+				+1.3
4,086,137	+				+1.5
4,086,138	-				+1.9
4,086,138	-				+3.7
4,086,143	+				-1.3
4,086,143	+				+1.7
4,086,143	+				-2.0
4,086,143	+				+0.9
4,086,143	+				+2.7
4,086,143	+				-0.8
4,086,143	+				+2.6
4,086,143	+				-0.8
4,086,144	-				+1.3
4,086,144	-				-2.1
4,086,144	-				-2.7
4,086,144	-				-0.2
4,086,144	-				-3.5
4,086,221	-				+0.5
4,086,221	-				+1.4
4,086,221	-				-2.5
4,086,264	-				-0.2
4,086,297	+				+0.0
4,086,297	+				-0.9
4,086,297	+				+4.4
4,086,298	-				+0.6
4,086,322	-				-0.1
4,086,334	+				+0.7
4,086,335	-				-1.7
4,086,374	-				+2.1
4,086,385	+				-0.4
4,086,413	-				+1.2
4,086,413	-				+0.9
4,086,413	-				+0.9
4,086,480	-		Psest_3918	0.20	-2.9
4,086,484	-		Psest_3918	0.22	-0.1
4,086,598	+		Psest_3918	0.55	+2.0
4,086,599	-		Psest_3918	0.55	-1.9
4,086,599	-		Psest_3918	0.55	+0.5
4,086,613	+		Psest_3918	0.60	-0.4
4,086,613	+		Psest_3918	0.60	-0.9
4,086,614	-		Psest_3918	0.60	+1.3
4,086,614	-		Psest_3918	0.60	-1.1
4,086,617	+		Psest_3918	0.61	-0.4
4,086,617	+		Psest_3918	0.61	-0.1
4,086,617	+		Psest_3918	0.61	-3.0
4,086,617	+		Psest_3918	0.61	-1.0
4,086,617	+		Psest_3918	0.61	-0.8
4,086,617	+		Psest_3918	0.61	-2.1
4,086,618	-		Psest_3918	0.61	-0.0
4,086,618	-		Psest_3918	0.61	+0.6
4,086,618	-		Psest_3918	0.61	-3.5
4,086,618	-		Psest_3918	0.61	-1.3
4,086,651	+		Psest_3918	0.71	-0.5
4,086,694	-		Psest_3918	0.83	-1.2
4,086,694	-		Psest_3918	0.83	-0.4
4,086,696	-		Psest_3918	0.84	+0.8
4,086,710	-		Psest_3918	0.88	-2.3
4,086,728	-				+3.8
4,086,787	+				-0.1
4,086,787	+				-1.2
4,086,787	+				-1.6
4,086,788	-				-1.1
4,086,793	+				+5.0
4,086,793	+				+0.6
4,086,793	+				+0.5
4,086,793	+				-1.3
4,086,793	+				-1.6
4,086,793	+				-0.3
4,086,794	-				-2.4
4,086,794	-				+1.1
4,086,875	-				+2.2
4,087,122	+		Psest_3919	0.15	-0.9
4,087,123	-		Psest_3919	0.15	-1.0
4,087,185	-		Psest_3919	0.22	+0.0
4,087,260	-		Psest_3919	0.30	-1.6
4,087,260	-		Psest_3919	0.30	-2.9
4,087,346	+		Psest_3919	0.40	-1.3
4,087,346	+		Psest_3919	0.40	-3.2
4,087,404	+		Psest_3919	0.46	-1.1
4,087,405	-		Psest_3919	0.46	+1.3
4,087,405	-		Psest_3919	0.46	-1.4
4,087,405	-		Psest_3919	0.46	+3.5
4,087,432	-		Psest_3919	0.49	-3.2
4,087,432	-		Psest_3919	0.49	+0.3
4,087,442	+		Psest_3919	0.50	+0.9
4,087,559	+		Psest_3919	0.63	-0.1
4,087,572	+		Psest_3919	0.65	-1.6
4,087,572	+		Psest_3919	0.65	-0.0
4,087,572	+		Psest_3919	0.65	-1.3
4,087,678	-		Psest_3919	0.76	-1.1
4,087,678	-		Psest_3919	0.76	-0.0