Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2980

Experiment: RCH2 grown on a colony of ecoli

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2 grown on a colony of ecoli
3,170,742	+		Psest_2979	0.16	-0.0
3,170,742	+		Psest_2979	0.16	-0.1
3,170,743	-		Psest_2979	0.16	+0.0
3,170,743	-		Psest_2979	0.16	+1.6
3,170,743	-		Psest_2979	0.16	-1.4
3,170,743	-		Psest_2979	0.16	-1.0
3,170,743	-		Psest_2979	0.16	+1.7
3,170,947	+		Psest_2979	0.34	-1.5
3,170,948	-		Psest_2979	0.34	+2.8
3,170,988	+		Psest_2979	0.38	+0.2
3,170,988	+		Psest_2979	0.38	-0.5
3,170,989	-		Psest_2979	0.38	-1.9
3,170,989	-		Psest_2979	0.38	-0.2
3,170,989	-		Psest_2979	0.38	-1.0
3,170,989	-		Psest_2979	0.38	-1.2
3,170,989	-		Psest_2979	0.38	+0.1
3,170,992	+		Psest_2979	0.38	-1.2
3,170,993	-		Psest_2979	0.38	+0.6
3,170,993	-		Psest_2979	0.38	+2.6
3,170,993	-		Psest_2979	0.38	-2.7
3,171,118	-		Psest_2979	0.49	-1.4
3,171,118	-		Psest_2979	0.49	-0.9
3,171,120	+		Psest_2979	0.50	+2.2
3,171,120	+		Psest_2979	0.50	+1.1
3,171,120	+		Psest_2979	0.50	+0.6
3,171,121	-		Psest_2979	0.50	-2.8
3,171,167	+		Psest_2979	0.54	+0.2
3,171,167	+		Psest_2979	0.54	+1.3
3,171,167	+		Psest_2979	0.54	-0.2
3,171,167	+		Psest_2979	0.54	+0.9
3,171,167	+		Psest_2979	0.54	+2.5
3,171,167	+		Psest_2979	0.54	+1.0
3,171,168	-		Psest_2979	0.54	-2.3
3,171,168	-		Psest_2979	0.54	-0.3
3,171,168	-		Psest_2979	0.54	+1.0
3,171,168	-		Psest_2979	0.54	+1.8
3,171,168	-		Psest_2979	0.54	+0.8
3,171,168	-		Psest_2979	0.54	-0.8
3,171,168	-		Psest_2979	0.54	-0.2
3,171,223	+		Psest_2979	0.59	-0.8
3,171,224	-		Psest_2979	0.59	-0.5
3,171,237	+		Psest_2979	0.60	+1.4
3,171,238	-		Psest_2979	0.60	-2.4
3,171,238	-		Psest_2979	0.60	-0.7
3,171,238	-		Psest_2979	0.60	+0.1
3,171,297	+		Psest_2979	0.65	+0.3
3,171,388	-		Psest_2979	0.73	-3.6
3,171,513	+		Psest_2979	0.84	-0.5
3,171,516	+		Psest_2979	0.84	-0.5
3,171,517	-		Psest_2979	0.84	-2.5
3,171,529	-		Psest_2979	0.85	-0.9
3,171,599	+				+1.1
3,171,599	+				-1.1
3,171,599	+				-2.3
3,171,599	+				-1.2
3,171,599	+				-1.2
3,171,599	+				-1.4
3,171,600	-				+2.8
3,171,600	-				+1.2
3,171,600	-				-2.6
3,171,653	+				-0.2
3,171,653	+				+0.5
3,171,654	-				+0.5
3,171,654	-				+0.7
3,171,688	-				+0.8
3,171,688	-				+3.4
3,171,719	+				-0.1
3,171,719	+				-1.2
3,171,719	+				-2.1
3,171,720	-				+0.9
3,171,755	+				+1.5
3,171,756	-				+0.1
3,171,756	-				+0.5
3,171,883	+		Psest_2980	0.10	-0.0
3,171,883	+		Psest_2980	0.10	+1.6
3,171,883	+		Psest_2980	0.10	+0.1
3,171,884	-		Psest_2980	0.10	-1.4
3,171,884	-		Psest_2980	0.10	-0.7
3,172,038	-		Psest_2980	0.19	+0.0
3,172,043	-		Psest_2980	0.19	+2.1
3,172,043	-		Psest_2980	0.19	-2.4
3,172,044	+		Psest_2980	0.19	+0.2
3,172,044	+		Psest_2980	0.19	-2.3
3,172,044	+		Psest_2980	0.19	+2.7
3,172,044	+		Psest_2980	0.19	+1.0
3,172,044	+		Psest_2980	0.19	+2.1
3,172,044	+		Psest_2980	0.19	+0.4
3,172,044	+		Psest_2980	0.19	+0.9
3,172,044	+		Psest_2980	0.19	-0.4
3,172,044	+		Psest_2980	0.19	+1.9
3,172,045	-		Psest_2980	0.19	-4.2
3,172,045	-		Psest_2980	0.19	-1.0
3,172,045	-		Psest_2980	0.19	-1.7
3,172,045	-		Psest_2980	0.19	-2.2
3,172,045	-		Psest_2980	0.19	-1.9
3,172,045	-		Psest_2980	0.19	-0.3
3,172,164	+		Psest_2980	0.26	-0.2
3,172,164	+		Psest_2980	0.26	-1.7
3,172,164	+		Psest_2980	0.26	+2.4
3,172,164	+		Psest_2980	0.26	-2.4
3,172,164	+		Psest_2980	0.26	+2.3
3,172,164	+		Psest_2980	0.26	+0.5
3,172,165	-		Psest_2980	0.26	+0.5
3,172,165	-		Psest_2980	0.26	+0.9
3,172,165	-		Psest_2980	0.26	-3.5
3,172,165	-		Psest_2980	0.26	-2.0
3,172,165	-		Psest_2980	0.26	+0.4
3,172,165	-		Psest_2980	0.26	+0.4
3,172,202	-		Psest_2980	0.28	+0.4
3,172,262	+		Psest_2980	0.31	-0.1
3,172,262	+		Psest_2980	0.31	-0.6
3,172,263	-		Psest_2980	0.31	-2.4
3,172,263	-		Psest_2980	0.31	-0.9
3,172,285	+		Psest_2980	0.33	-0.1
3,172,285	+		Psest_2980	0.33	-1.4
3,172,285	+		Psest_2980	0.33	-1.6
3,172,285	+		Psest_2980	0.33	-1.1
3,172,285	+		Psest_2980	0.33	+3.6
3,172,285	+		Psest_2980	0.33	+1.2
3,172,285	+		Psest_2980	0.33	-2.2
3,172,286	-		Psest_2980	0.33	-2.2
3,172,286	-		Psest_2980	0.33	-0.1
3,172,286	-		Psest_2980	0.33	-0.8
3,172,307	+		Psest_2980	0.34	-0.2
3,172,500	-		Psest_2980	0.45	-0.2
3,172,665	+		Psest_2980	0.54	-1.8
3,172,665	+		Psest_2980	0.54	+2.5
3,172,665	+		Psest_2980	0.54	-0.6
3,172,665	+		Psest_2980	0.54	+0.6
3,172,665	+		Psest_2980	0.54	-1.4
3,172,666	-		Psest_2980	0.54	-2.3
3,172,666	-		Psest_2980	0.54	-1.5
3,172,666	-		Psest_2980	0.54	-1.9
3,172,666	-		Psest_2980	0.54	-1.2
3,172,705	+		Psest_2980	0.56	-0.4
3,172,761	+		Psest_2980	0.59	+0.3
3,172,761	+		Psest_2980	0.59	+0.8
3,172,761	+		Psest_2980	0.59	+3.2
3,172,762	-		Psest_2980	0.59	+1.0
3,172,783	+		Psest_2980	0.61	-2.3
3,172,783	+		Psest_2980	0.61	-0.8
3,172,867	+		Psest_2980	0.65	-1.8
3,172,867	+		Psest_2980	0.65	-0.3
3,172,921	+		Psest_2980	0.68	-3.5
3,172,922	-		Psest_2980	0.68	-0.5
3,172,922	-		Psest_2980	0.68	-1.5
3,172,923	+		Psest_2980	0.69	+0.7
3,172,923	+		Psest_2980	0.69	-2.9
3,172,923	+		Psest_2980	0.69	-2.1
3,172,923	+		Psest_2980	0.69	-2.7
3,172,924	-		Psest_2980	0.69	-3.1
3,172,924	-		Psest_2980	0.69	-1.8
3,172,924	-		Psest_2980	0.69	-0.5
3,172,924	-		Psest_2980	0.69	-0.2
3,173,037	+		Psest_2980	0.75	+0.1
3,173,255	-		Psest_2980	0.87	-2.9
3,173,309	-				+1.4
3,173,309	-				+2.4
3,173,470	+				+3.2
3,173,638	+		Psest_2981	0.55	+0.2
3,173,638	+		Psest_2981	0.55	-1.0
3,173,638	+		Psest_2981	0.55	-1.7
3,173,796	-				-1.0
3,173,889	+				+1.7
3,173,890	-				-0.9