Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0726

Experiment: RCH2 grown on a colony of ecoli

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0724 and Psest_0725 are separated by 104 nucleotidesPsest_0725 and Psest_0726 are separated by 16 nucleotidesPsest_0726 and Psest_0727 are separated by 262 nucleotides Psest_0724: Psest_0724 - Deoxyinosine 3'endonuclease (endonuclease V), at 793,863 to 794,591 _0724 Psest_0725: Psest_0725 - Negative regulator of beta-lactamase expression, at 794,696 to 795,247 _0725 Psest_0726: Psest_0726 - Membrane protein required for beta-lactamase induction, at 795,264 to 796,100 _0726 Psest_0727: Psest_0727 - Methyl-accepting chemotaxis protein, at 796,363 to 798,393 _0727 Position (kb) 795 796 797Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 794.266 kb on + strand, within Psest_0724at 794.395 kb on + strand, within Psest_0724at 794.605 kb on + strandat 794.781 kb on + strand, within Psest_0725at 794.781 kb on + strand, within Psest_0725at 794.793 kb on + strand, within Psest_0725at 794.794 kb on - strand, within Psest_0725at 794.794 kb on - strand, within Psest_0725at 795.055 kb on + strand, within Psest_0725at 795.238 kb on + strandat 795.239 kb on - strandat 795.239 kb on - strandat 795.415 kb on + strand, within Psest_0726at 795.519 kb on + strand, within Psest_0726at 795.519 kb on + strand, within Psest_0726at 795.520 kb on - strand, within Psest_0726at 795.520 kb on - strand, within Psest_0726at 795.690 kb on + strand, within Psest_0726at 795.690 kb on + strand, within Psest_0726at 795.690 kb on + strand, within Psest_0726at 795.690 kb on + strand, within Psest_0726at 795.690 kb on + strand, within Psest_0726at 795.690 kb on + strand, within Psest_0726at 795.690 kb on + strand, within Psest_0726at 795.690 kb on + strand, within Psest_0726at 795.690 kb on + strand, within Psest_0726at 795.690 kb on + strand, within Psest_0726at 795.690 kb on + strand, within Psest_0726at 795.691 kb on - strand, within Psest_0726at 795.691 kb on - strand, within Psest_0726at 795.691 kb on - strand, within Psest_0726at 795.691 kb on - strand, within Psest_0726at 795.691 kb on - strand, within Psest_0726at 795.691 kb on - strand, within Psest_0726at 795.691 kb on - strand, within Psest_0726at 795.854 kb on - strand, within Psest_0726at 795.859 kb on + strand, within Psest_0726at 795.934 kb on + strand, within Psest_0726at 795.934 kb on + strand, within Psest_0726at 795.934 kb on + strand, within Psest_0726at 795.934 kb on + strand, within Psest_0726at 795.934 kb on + strand, within Psest_0726at 795.935 kb on - strand, within Psest_0726at 795.935 kb on - strand, within Psest_0726at 796.045 kb on + strandat 796.249 kb on - strandat 796.249 kb on - strandat 796.274 kb on - strandat 796.345 kb on - strandat 796.368 kb on + strandat 796.369 kb on - strandat 796.369 kb on - strandat 796.369 kb on - strandat 796.369 kb on - strandat 796.378 kb on + strandat 796.379 kb on - strandat 796.379 kb on - strandat 796.471 kb on + strandat 796.471 kb on + strandat 796.471 kb on + strandat 796.471 kb on + strandat 796.471 kb on + strandat 796.471 kb on + strandat 796.471 kb on + strandat 796.471 kb on + strandat 796.471 kb on + strandat 796.471 kb on + strandat 796.471 kb on + strandat 796.472 kb on - strandat 796.472 kb on - strandat 796.472 kb on - strandat 796.472 kb on - strandat 796.472 kb on - strandat 796.472 kb on - strandat 796.472 kb on - strandat 796.472 kb on - strandat 796.472 kb on - strandat 796.474 kb on + strandat 796.474 kb on + strandat 796.975 kb on + strand, within Psest_0727at 796.976 kb on - strand, within Psest_0727at 796.994 kb on - strand, within Psest_0727at 796.994 kb on - strand, within Psest_0727at 797.062 kb on + strand, within Psest_0727

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2 grown on a colony of ecoli
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794,266 + Psest_0724 0.55 -1.0
794,395 + Psest_0724 0.73 -0.4
794,605 + +4.3
794,781 + Psest_0725 0.15 +0.8
794,781 + Psest_0725 0.15 +2.6
794,793 + Psest_0725 0.18 -2.0
794,794 - Psest_0725 0.18 +2.1
794,794 - Psest_0725 0.18 -2.0
795,055 + Psest_0725 0.65 -0.7
795,238 + +0.0
795,239 - +0.9
795,239 - +2.3
795,415 + Psest_0726 0.18 -3.3
795,519 + Psest_0726 0.30 -2.2
795,519 + Psest_0726 0.30 -1.5
795,520 - Psest_0726 0.31 +1.0
795,520 - Psest_0726 0.31 +0.7
795,690 + Psest_0726 0.51 -2.8
795,690 + Psest_0726 0.51 -0.2
795,690 + Psest_0726 0.51 +0.3
795,690 + Psest_0726 0.51 +1.1
795,690 + Psest_0726 0.51 -0.6
795,690 + Psest_0726 0.51 -0.7
795,690 + Psest_0726 0.51 -2.1
795,690 + Psest_0726 0.51 -0.0
795,690 + Psest_0726 0.51 +0.2
795,690 + Psest_0726 0.51 -0.1
795,690 + Psest_0726 0.51 +0.8
795,691 - Psest_0726 0.51 -1.0
795,691 - Psest_0726 0.51 -1.6
795,691 - Psest_0726 0.51 +0.9
795,691 - Psest_0726 0.51 +1.2
795,691 - Psest_0726 0.51 +0.3
795,691 - Psest_0726 0.51 +0.0
795,691 - Psest_0726 0.51 +2.1
795,854 - Psest_0726 0.70 -1.1
795,859 + Psest_0726 0.71 -0.6
795,934 + Psest_0726 0.80 -1.3
795,934 + Psest_0726 0.80 -2.6
795,934 + Psest_0726 0.80 -1.0
795,934 + Psest_0726 0.80 -1.9
795,934 + Psest_0726 0.80 -1.4
795,935 - Psest_0726 0.80 -2.2
795,935 - Psest_0726 0.80 +0.5
796,045 + +0.3
796,249 - -0.1
796,249 - -0.7
796,274 - -2.0
796,345 - +1.4
796,368 + -0.8
796,369 - -0.7
796,369 - -1.4
796,369 - -0.2
796,369 - -2.1
796,378 + +0.6
796,379 - -1.3
796,379 - +1.2
796,471 + -2.1
796,471 + -0.2
796,471 + -0.3
796,471 + -0.4
796,471 + +0.1
796,471 + +4.7
796,471 + -1.2
796,471 + +0.5
796,471 + +0.1
796,471 + +0.7
796,471 + -0.9
796,472 - +0.5
796,472 - +0.1
796,472 - -1.2
796,472 - +0.5
796,472 - +1.5
796,472 - +3.0
796,472 - -0.8
796,472 - -0.2
796,472 - +0.4
796,474 + -1.1
796,474 + -2.9
796,975 + Psest_0727 0.30 +0.5
796,976 - Psest_0727 0.30 +1.7
796,994 - Psest_0727 0.31 +2.8
796,994 - Psest_0727 0.31 -0.7
797,062 + Psest_0727 0.34 -0.5

Or see this region's nucleotide sequence