Experiment: RCH2 grown on a colony of ecoli
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0368 and Psest_0369 are separated by 102 nucleotides Psest_0369 and Psest_0370 are separated by 35 nucleotides
Psest_0368: Psest_0368 - Transcriptional regulator, at 393,951 to 394,865
_0368
Psest_0369: Psest_0369 - L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily, at 394,968 to 396,110
_0369
Psest_0370: Psest_0370 - Uncharacterized protein conserved in bacteria, at 396,146 to 397,666
_0370
Position (kb) 394
395
396
397 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 394.102 kb on - strand, within Psest_0368 at 394.283 kb on - strand, within Psest_0368 at 394.749 kb on + strand, within Psest_0368 at 394.836 kb on - strand at 394.980 kb on + strand at 394.980 kb on + strand at 394.980 kb on + strand at 394.980 kb on + strand at 395.059 kb on + strand at 395.059 kb on + strand at 395.060 kb on - strand at 395.132 kb on + strand, within Psest_0369 at 395.133 kb on - strand, within Psest_0369 at 395.151 kb on + strand, within Psest_0369 at 395.151 kb on + strand, within Psest_0369 at 395.181 kb on + strand, within Psest_0369 at 395.182 kb on - strand, within Psest_0369 at 395.182 kb on - strand, within Psest_0369 at 395.406 kb on + strand, within Psest_0369 at 395.406 kb on + strand, within Psest_0369 at 395.406 kb on + strand, within Psest_0369 at 395.406 kb on + strand, within Psest_0369 at 395.406 kb on + strand, within Psest_0369 at 395.406 kb on + strand, within Psest_0369 at 395.407 kb on - strand, within Psest_0369 at 395.407 kb on - strand, within Psest_0369 at 395.407 kb on - strand, within Psest_0369 at 395.407 kb on - strand, within Psest_0369 at 395.407 kb on - strand, within Psest_0369 at 395.915 kb on + strand, within Psest_0369 at 396.198 kb on + strand at 396.335 kb on - strand, within Psest_0370 at 396.344 kb on + strand, within Psest_0370 at 396.344 kb on + strand, within Psest_0370 at 396.531 kb on + strand, within Psest_0370 at 396.531 kb on + strand, within Psest_0370 at 396.532 kb on - strand, within Psest_0370 at 396.588 kb on + strand, within Psest_0370 at 396.588 kb on + strand, within Psest_0370 at 396.588 kb on + strand, within Psest_0370 at 396.589 kb on - strand, within Psest_0370 at 396.589 kb on - strand, within Psest_0370 at 396.589 kb on - strand, within Psest_0370 at 396.589 kb on - strand, within Psest_0370 at 396.589 kb on - strand, within Psest_0370 at 396.780 kb on + strand, within Psest_0370 at 396.781 kb on - strand, within Psest_0370 at 396.819 kb on + strand, within Psest_0370 at 396.819 kb on + strand, within Psest_0370 at 396.819 kb on + strand, within Psest_0370 at 396.819 kb on + strand, within Psest_0370 at 396.819 kb on + strand, within Psest_0370 at 396.819 kb on + strand, within Psest_0370 at 396.819 kb on + strand, within Psest_0370 at 396.819 kb on + strand, within Psest_0370 at 396.819 kb on + strand, within Psest_0370 at 396.820 kb on - strand, within Psest_0370
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 grown on a colony of ecoli remove 394,102 - Psest_0368 0.17 +0.3 394,283 - Psest_0368 0.36 +0.4 394,749 + Psest_0368 0.87 -0.0 394,836 - -2.3 394,980 + -2.9 394,980 + -1.2 394,980 + -0.3 394,980 + -0.1 395,059 + +1.7 395,059 + +0.9 395,060 - +2.4 395,132 + Psest_0369 0.14 +3.8 395,133 - Psest_0369 0.14 +1.1 395,151 + Psest_0369 0.16 +0.1 395,151 + Psest_0369 0.16 +1.4 395,181 + Psest_0369 0.19 +3.7 395,182 - Psest_0369 0.19 +0.2 395,182 - Psest_0369 0.19 -0.3 395,406 + Psest_0369 0.38 -3.0 395,406 + Psest_0369 0.38 -2.2 395,406 + Psest_0369 0.38 +0.6 395,406 + Psest_0369 0.38 +0.1 395,406 + Psest_0369 0.38 -3.8 395,406 + Psest_0369 0.38 -0.7 395,407 - Psest_0369 0.38 -0.4 395,407 - Psest_0369 0.38 -1.8 395,407 - Psest_0369 0.38 +1.4 395,407 - Psest_0369 0.38 +1.9 395,407 - Psest_0369 0.38 +0.8 395,915 + Psest_0369 0.83 +0.0 396,198 + -1.0 396,335 - Psest_0370 0.12 +0.4 396,344 + Psest_0370 0.13 -2.8 396,344 + Psest_0370 0.13 -0.5 396,531 + Psest_0370 0.25 +0.1 396,531 + Psest_0370 0.25 +0.3 396,532 - Psest_0370 0.25 -0.3 396,588 + Psest_0370 0.29 +0.1 396,588 + Psest_0370 0.29 -2.0 396,588 + Psest_0370 0.29 -0.7 396,589 - Psest_0370 0.29 +0.1 396,589 - Psest_0370 0.29 -2.5 396,589 - Psest_0370 0.29 -0.1 396,589 - Psest_0370 0.29 -3.0 396,589 - Psest_0370 0.29 +1.1 396,780 + Psest_0370 0.42 +0.3 396,781 - Psest_0370 0.42 +2.1 396,819 + Psest_0370 0.44 +0.7 396,819 + Psest_0370 0.44 +0.0 396,819 + Psest_0370 0.44 -0.3 396,819 + Psest_0370 0.44 -1.0 396,819 + Psest_0370 0.44 +0.4 396,819 + Psest_0370 0.44 +0.3 396,819 + Psest_0370 0.44 -1.3 396,819 + Psest_0370 0.44 -0.3 396,819 + Psest_0370 0.44 -0.2 396,820 - Psest_0370 0.44 +0.5
Or see this region's nucleotide sequence