Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0179

Experiment: RCH2 grown on a colony of ecoli

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0178 and Psest_0179 are separated by 110 nucleotidesPsest_0179 and Psest_0180 are separated by 120 nucleotides Psest_0178: Psest_0178 - Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family, at 171,081 to 172,301 _0178 Psest_0179: Psest_0179 - ABC-type Fe3+ transport system, periplasmic component, at 172,412 to 173,413 _0179 Psest_0180: Psest_0180 - ABC-type Fe3+ transport system, permease component, at 173,534 to 175,150 _0180 Position (kb) 172 173 174Strain fitness (log2 ratio) -1 0 1at 172.327 kb on + strandat 172.327 kb on + strandat 172.327 kb on + strandat 172.488 kb on + strandat 172.488 kb on + strandat 173.479 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2 grown on a colony of ecoli
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172,327 + +0.3
172,327 + -1.3
172,327 + +1.1
172,488 + +0.1
172,488 + +1.7
173,479 + +0.5

Or see this region's nucleotide sequence