Experiment: Time24
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0587 and Psest_0588 are separated by 378 nucleotides Psest_0588 and Psest_0589 overlap by 26 nucleotides Psest_0589 and Psest_0590 are separated by 544 nucleotides
Psest_0587: Psest_0587 - Domain of Unknown Function (DUF326)., at 637,930 to 638,259
_0587
Psest_0588: Psest_0588 - Short-chain dehydrogenases of various substrate specificities, at 638,638 to 639,363
_0588
Psest_0589: Psest_0589 - Uncharacterized protein conserved in bacteria, at 639,338 to 639,793
_0589
Psest_0590: Psest_0590 - hypothetical protein, at 640,338 to 642,005
_0590
Position (kb) 638
639
640 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 637.788 kb on + strand at 637.788 kb on + strand at 637.788 kb on + strand at 637.789 kb on - strand at 637.793 kb on + strand at 637.794 kb on - strand at 637.794 kb on - strand at 637.794 kb on - strand at 637.803 kb on + strand at 637.804 kb on - strand at 637.804 kb on - strand at 637.804 kb on - strand at 637.843 kb on + strand at 637.843 kb on + strand at 637.844 kb on - strand at 637.844 kb on - strand at 637.876 kb on + strand at 637.902 kb on + strand at 637.902 kb on + strand at 637.902 kb on + strand at 637.902 kb on + strand at 637.902 kb on + strand at 637.903 kb on - strand at 637.903 kb on - strand at 637.903 kb on - strand at 637.903 kb on - strand at 637.927 kb on + strand at 637.927 kb on + strand at 637.927 kb on + strand at 637.928 kb on - strand at 637.928 kb on - strand at 637.928 kb on - strand at 637.928 kb on - strand at 637.928 kb on - strand at 638.027 kb on + strand, within Psest_0587 at 638.117 kb on - strand, within Psest_0587 at 638.121 kb on + strand, within Psest_0587 at 638.122 kb on - strand, within Psest_0587 at 638.122 kb on - strand, within Psest_0587 at 638.122 kb on - strand, within Psest_0587 at 638.122 kb on - strand, within Psest_0587 at 638.289 kb on - strand at 638.444 kb on - strand at 638.469 kb on + strand at 638.470 kb on - strand at 638.470 kb on - strand at 638.470 kb on - strand at 638.470 kb on - strand at 638.503 kb on + strand at 638.651 kb on + strand at 638.681 kb on + strand at 638.681 kb on + strand at 638.681 kb on + strand at 638.682 kb on - strand at 638.684 kb on + strand at 638.894 kb on + strand, within Psest_0588 at 638.894 kb on + strand, within Psest_0588 at 638.895 kb on - strand, within Psest_0588 at 638.895 kb on - strand, within Psest_0588 at 638.895 kb on - strand, within Psest_0588 at 638.895 kb on - strand, within Psest_0588 at 639.009 kb on + strand, within Psest_0588 at 639.090 kb on + strand, within Psest_0588 at 639.091 kb on - strand, within Psest_0588 at 639.103 kb on + strand, within Psest_0588 at 639.103 kb on + strand, within Psest_0588 at 639.103 kb on + strand, within Psest_0588 at 639.104 kb on - strand, within Psest_0588 at 639.104 kb on - strand, within Psest_0588 at 639.104 kb on - strand, within Psest_0588 at 639.104 kb on - strand, within Psest_0588 at 639.104 kb on - strand, within Psest_0588 at 639.104 kb on - strand, within Psest_0588 at 639.104 kb on - strand, within Psest_0588 at 639.104 kb on - strand, within Psest_0588 at 639.104 kb on - strand, within Psest_0588 at 639.185 kb on + strand, within Psest_0588 at 639.185 kb on + strand, within Psest_0588 at 639.186 kb on - strand, within Psest_0588 at 639.196 kb on + strand, within Psest_0588 at 639.197 kb on - strand, within Psest_0588 at 639.197 kb on - strand, within Psest_0588 at 639.233 kb on + strand, within Psest_0588 at 639.233 kb on + strand, within Psest_0588 at 639.234 kb on - strand, within Psest_0588 at 639.234 kb on - strand, within Psest_0588 at 639.234 kb on - strand, within Psest_0588 at 639.234 kb on - strand, within Psest_0588 at 639.353 kb on + strand at 639.354 kb on - strand at 639.354 kb on - strand at 639.354 kb on - strand at 639.354 kb on - strand at 639.465 kb on - strand, within Psest_0589 at 639.465 kb on - strand, within Psest_0589 at 639.504 kb on + strand, within Psest_0589 at 639.536 kb on + strand, within Psest_0589 at 639.537 kb on - strand, within Psest_0589 at 639.537 kb on - strand, within Psest_0589 at 639.537 kb on - strand, within Psest_0589 at 639.537 kb on - strand, within Psest_0589 at 639.557 kb on - strand, within Psest_0589 at 639.601 kb on + strand, within Psest_0589 at 639.601 kb on + strand, within Psest_0589 at 639.602 kb on - strand, within Psest_0589 at 639.602 kb on - strand, within Psest_0589 at 639.608 kb on - strand, within Psest_0589 at 639.609 kb on + strand, within Psest_0589 at 639.609 kb on + strand, within Psest_0589 at 639.609 kb on + strand, within Psest_0589 at 639.609 kb on + strand, within Psest_0589 at 639.609 kb on + strand, within Psest_0589 at 639.610 kb on - strand, within Psest_0589 at 639.610 kb on - strand, within Psest_0589 at 639.610 kb on - strand, within Psest_0589 at 639.638 kb on + strand, within Psest_0589 at 639.639 kb on - strand, within Psest_0589 at 639.716 kb on - strand, within Psest_0589 at 639.720 kb on - strand, within Psest_0589 at 639.735 kb on + strand, within Psest_0589 at 639.740 kb on - strand, within Psest_0589 at 639.780 kb on + strand at 639.798 kb on - strand at 639.798 kb on - strand at 639.798 kb on - strand at 639.856 kb on + strand at 639.857 kb on - strand at 639.857 kb on - strand at 639.881 kb on + strand at 639.931 kb on - strand at 639.940 kb on + strand at 639.957 kb on - strand at 639.957 kb on - strand at 639.967 kb on + strand at 640.011 kb on + strand at 640.025 kb on + strand at 640.025 kb on + strand at 640.026 kb on - strand at 640.030 kb on + strand at 640.031 kb on - strand at 640.033 kb on - strand at 640.128 kb on - strand at 640.145 kb on - strand at 640.145 kb on - strand at 640.156 kb on + strand at 640.157 kb on - strand at 640.157 kb on - strand at 640.157 kb on - strand at 640.191 kb on + strand at 640.191 kb on + strand at 640.191 kb on + strand at 640.192 kb on - strand at 640.192 kb on - strand at 640.192 kb on - strand at 640.192 kb on - strand at 640.192 kb on - strand at 640.225 kb on + strand at 640.225 kb on + strand at 640.228 kb on + strand at 640.228 kb on + strand at 640.228 kb on + strand at 640.239 kb on + strand at 640.240 kb on - strand at 640.240 kb on - strand at 640.240 kb on - strand at 640.240 kb on - strand at 640.240 kb on - strand at 640.240 kb on - strand at 640.240 kb on - strand at 640.240 kb on - strand at 640.240 kb on - strand at 640.240 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Time24 remove 637,788 + +0.4 637,788 + -0.1 637,788 + -0.6 637,789 - -1.2 637,793 + +1.1 637,794 - +1.0 637,794 - -0.6 637,794 - -0.1 637,803 + +0.4 637,804 - -0.8 637,804 - -0.6 637,804 - -0.5 637,843 + -0.1 637,843 + +1.1 637,844 - +0.5 637,844 - -0.1 637,876 + -0.8 637,902 + -0.6 637,902 + -0.3 637,902 + +1.4 637,902 + +0.5 637,902 + -0.1 637,903 - +0.9 637,903 - -2.2 637,903 - -0.1 637,903 - +0.2 637,927 + +1.6 637,927 + -0.5 637,927 + -0.2 637,928 - -0.3 637,928 - +0.1 637,928 - +0.1 637,928 - +0.9 637,928 - -0.4 638,027 + Psest_0587 0.29 +0.5 638,117 - Psest_0587 0.57 -0.3 638,121 + Psest_0587 0.58 +0.1 638,122 - Psest_0587 0.58 -0.2 638,122 - Psest_0587 0.58 +1.1 638,122 - Psest_0587 0.58 -0.5 638,122 - Psest_0587 0.58 +0.5 638,289 - +0.1 638,444 - +0.9 638,469 + -0.2 638,470 - -0.6 638,470 - +0.3 638,470 - -0.7 638,470 - +0.1 638,503 + -0.3 638,651 + -0.1 638,681 + -0.0 638,681 + -0.2 638,681 + +0.1 638,682 - -0.7 638,684 + -0.3 638,894 + Psest_0588 0.35 +0.5 638,894 + Psest_0588 0.35 -0.3 638,895 - Psest_0588 0.35 +0.1 638,895 - Psest_0588 0.35 -0.5 638,895 - Psest_0588 0.35 +0.1 638,895 - Psest_0588 0.35 -0.1 639,009 + Psest_0588 0.51 +0.3 639,090 + Psest_0588 0.62 +0.1 639,091 - Psest_0588 0.62 +0.0 639,103 + Psest_0588 0.64 +1.1 639,103 + Psest_0588 0.64 -0.7 639,103 + Psest_0588 0.64 -1.2 639,104 - Psest_0588 0.64 -0.9 639,104 - Psest_0588 0.64 +0.2 639,104 - Psest_0588 0.64 +1.3 639,104 - Psest_0588 0.64 -0.5 639,104 - Psest_0588 0.64 +0.6 639,104 - Psest_0588 0.64 +0.1 639,104 - Psest_0588 0.64 +0.5 639,104 - Psest_0588 0.64 +0.4 639,104 - Psest_0588 0.64 -0.2 639,185 + Psest_0588 0.75 -0.5 639,185 + Psest_0588 0.75 -0.1 639,186 - Psest_0588 0.75 +0.6 639,196 + Psest_0588 0.77 +0.7 639,197 - Psest_0588 0.77 +0.0 639,197 - Psest_0588 0.77 +1.5 639,233 + Psest_0588 0.82 +0.5 639,233 + Psest_0588 0.82 +0.8 639,234 - Psest_0588 0.82 -0.8 639,234 - Psest_0588 0.82 -1.4 639,234 - Psest_0588 0.82 -0.2 639,234 - Psest_0588 0.82 -0.1 639,353 + +1.1 639,354 - +0.7 639,354 - +0.2 639,354 - -1.1 639,354 - +0.5 639,465 - Psest_0589 0.28 -1.7 639,465 - Psest_0589 0.28 -0.1 639,504 + Psest_0589 0.36 +2.1 639,536 + Psest_0589 0.43 -1.1 639,537 - Psest_0589 0.44 +1.0 639,537 - Psest_0589 0.44 -0.7 639,537 - Psest_0589 0.44 +0.3 639,537 - Psest_0589 0.44 -1.1 639,557 - Psest_0589 0.48 +0.6 639,601 + Psest_0589 0.58 +0.6 639,601 + Psest_0589 0.58 +0.6 639,602 - Psest_0589 0.58 -0.3 639,602 - Psest_0589 0.58 +0.5 639,608 - Psest_0589 0.59 +0.2 639,609 + Psest_0589 0.59 +0.6 639,609 + Psest_0589 0.59 -0.1 639,609 + Psest_0589 0.59 -0.6 639,609 + Psest_0589 0.59 -0.1 639,609 + Psest_0589 0.59 -1.3 639,610 - Psest_0589 0.60 -0.3 639,610 - Psest_0589 0.60 -0.4 639,610 - Psest_0589 0.60 -0.1 639,638 + Psest_0589 0.66 -0.1 639,639 - Psest_0589 0.66 +0.6 639,716 - Psest_0589 0.83 -1.2 639,720 - Psest_0589 0.84 -0.1 639,735 + Psest_0589 0.87 -0.3 639,740 - Psest_0589 0.88 -0.8 639,780 + -0.2 639,798 - -0.5 639,798 - -0.4 639,798 - +0.1 639,856 + +0.4 639,857 - +0.7 639,857 - -0.2 639,881 + -0.1 639,931 - +0.6 639,940 + +1.1 639,957 - -2.2 639,957 - +0.6 639,967 + +0.1 640,011 + -0.7 640,025 + +0.6 640,025 + +0.7 640,026 - -0.2 640,030 + -0.1 640,031 - -0.3 640,033 - -0.8 640,128 - +0.5 640,145 - -1.4 640,145 - +1.1 640,156 + +0.4 640,157 - +1.1 640,157 - +0.1 640,157 - -1.0 640,191 + +0.9 640,191 + +0.1 640,191 + -0.2 640,192 - -0.1 640,192 - -0.2 640,192 - -0.9 640,192 - -0.1 640,192 - +0.1 640,225 + -0.3 640,225 + +0.1 640,228 + -0.1 640,228 + -0.3 640,228 + -0.6 640,239 + -3.7 640,240 - -0.5 640,240 - -0.1 640,240 - +0.3 640,240 - +0.3 640,240 - +0.4 640,240 - -0.2 640,240 - -0.0 640,240 - -1.1 640,240 - -1.1 640,240 - +0.6
Or see this region's nucleotide sequence