Experiment: Vanillin 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0744 and Psest_0745 are separated by 212 nucleotides Psest_0745 and Psest_0746 are separated by 49 nucleotides Psest_0746 and Psest_0747 overlap by 1 nucleotides
Psest_0744: Psest_0744 - Uncharacterized conserved protein, at 817,137 to 817,724
_0744
Psest_0745: Psest_0745 - Domain of Unknown Function (DUF326)., at 817,937 to 818,266
_0745
Psest_0746: Psest_0746 - Protein of unknown function (DUF1826)., at 818,316 to 818,960
_0746
Psest_0747: Psest_0747 - Putative GTPases (G3E family), at 818,960 to 820,162
_0747
Position (kb) 818
819 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 817.584 kb on - strand, within Psest_0744 at 817.750 kb on + strand at 817.767 kb on - strand at 817.851 kb on - strand at 817.854 kb on + strand at 817.854 kb on + strand at 817.854 kb on + strand at 817.854 kb on + strand at 817.854 kb on + strand at 817.854 kb on + strand at 817.854 kb on + strand at 817.854 kb on + strand at 817.854 kb on + strand at 817.854 kb on + strand at 817.854 kb on + strand at 817.854 kb on + strand at 817.855 kb on - strand at 817.855 kb on - strand at 817.855 kb on - strand at 817.855 kb on - strand at 817.855 kb on - strand at 817.855 kb on - strand at 817.855 kb on - strand at 817.855 kb on - strand at 817.855 kb on - strand at 817.855 kb on - strand at 817.855 kb on - strand at 817.855 kb on - strand at 817.857 kb on + strand at 817.952 kb on + strand at 817.953 kb on - strand at 817.953 kb on - strand at 818.551 kb on + strand, within Psest_0746 at 818.551 kb on + strand, within Psest_0746 at 818.552 kb on - strand, within Psest_0746 at 818.552 kb on - strand, within Psest_0746 at 818.552 kb on - strand, within Psest_0746 at 818.568 kb on + strand, within Psest_0746 at 818.583 kb on + strand, within Psest_0746 at 818.583 kb on + strand, within Psest_0746 at 818.583 kb on + strand, within Psest_0746 at 818.583 kb on + strand, within Psest_0746 at 818.583 kb on + strand, within Psest_0746 at 818.583 kb on + strand, within Psest_0746 at 818.584 kb on - strand, within Psest_0746 at 818.584 kb on - strand, within Psest_0746 at 818.584 kb on - strand, within Psest_0746 at 818.584 kb on - strand, within Psest_0746 at 818.584 kb on - strand, within Psest_0746 at 818.584 kb on - strand, within Psest_0746 at 818.584 kb on - strand, within Psest_0746 at 818.898 kb on + strand at 818.898 kb on + strand at 818.898 kb on + strand at 818.899 kb on - strand at 818.899 kb on - strand at 818.899 kb on - strand at 819.222 kb on + strand, within Psest_0747 at 819.223 kb on - strand, within Psest_0747 at 819.223 kb on - strand, within Psest_0747 at 819.348 kb on + strand, within Psest_0747 at 819.348 kb on + strand, within Psest_0747 at 819.348 kb on + strand, within Psest_0747 at 819.349 kb on - strand, within Psest_0747 at 819.349 kb on - strand, within Psest_0747 at 819.349 kb on - strand, within Psest_0747 at 819.349 kb on - strand, within Psest_0747 at 819.384 kb on + strand, within Psest_0747 at 819.405 kb on + strand, within Psest_0747 at 819.405 kb on + strand, within Psest_0747 at 819.405 kb on + strand, within Psest_0747 at 819.405 kb on + strand, within Psest_0747
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 2 mM remove 817,584 - Psest_0744 0.76 +1.5 817,750 + -2.0 817,767 - +0.7 817,851 - +0.8 817,854 + +0.3 817,854 + -0.7 817,854 + -2.8 817,854 + -0.7 817,854 + -2.3 817,854 + +1.9 817,854 + +1.7 817,854 + -2.6 817,854 + +3.6 817,854 + -0.2 817,854 + +1.7 817,854 + -0.0 817,855 - +1.0 817,855 - +2.7 817,855 - +0.7 817,855 - -1.8 817,855 - -0.8 817,855 - +1.3 817,855 - +1.4 817,855 - +1.2 817,855 - -0.7 817,855 - +1.4 817,855 - -0.1 817,855 - +1.4 817,857 + -1.5 817,952 + +1.5 817,953 - +1.0 817,953 - -0.9 818,551 + Psest_0746 0.36 +2.3 818,551 + Psest_0746 0.36 +0.3 818,552 - Psest_0746 0.37 +0.1 818,552 - Psest_0746 0.37 +0.1 818,552 - Psest_0746 0.37 -0.1 818,568 + Psest_0746 0.39 +0.6 818,583 + Psest_0746 0.41 -2.2 818,583 + Psest_0746 0.41 +0.5 818,583 + Psest_0746 0.41 -0.4 818,583 + Psest_0746 0.41 -1.2 818,583 + Psest_0746 0.41 +0.7 818,583 + Psest_0746 0.41 +0.3 818,584 - Psest_0746 0.42 -0.4 818,584 - Psest_0746 0.42 -2.1 818,584 - Psest_0746 0.42 -1.3 818,584 - Psest_0746 0.42 -1.7 818,584 - Psest_0746 0.42 -2.2 818,584 - Psest_0746 0.42 -2.3 818,584 - Psest_0746 0.42 -2.1 818,898 + +0.9 818,898 + +2.7 818,898 + +1.7 818,899 - +0.6 818,899 - -0.3 818,899 - +0.9 819,222 + Psest_0747 0.22 -1.6 819,223 - Psest_0747 0.22 +0.0 819,223 - Psest_0747 0.22 -0.4 819,348 + Psest_0747 0.32 -0.2 819,348 + Psest_0747 0.32 -1.0 819,348 + Psest_0747 0.32 -0.3 819,349 - Psest_0747 0.32 +0.6 819,349 - Psest_0747 0.32 +0.4 819,349 - Psest_0747 0.32 -0.3 819,349 - Psest_0747 0.32 +1.4 819,384 + Psest_0747 0.35 -0.1 819,405 + Psest_0747 0.37 -0.6 819,405 + Psest_0747 0.37 -2.0 819,405 + Psest_0747 0.37 +1.2 819,405 + Psest_0747 0.37 +0.8
Or see this region's nucleotide sequence