Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3759

Experiment: Vanillin 2 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillin 2 mM
3,929,085	+		Psest_3758	0.77	-1.4
3,929,085	+		Psest_3758	0.77	-0.7
3,929,086	-		Psest_3758	0.77	-0.3
3,929,223	+		Psest_3758	0.82	+0.5
3,929,223	+		Psest_3758	0.82	-0.4
3,929,223	+		Psest_3758	0.82	-0.6
3,929,223	+		Psest_3758	0.82	-0.5
3,929,224	-		Psest_3758	0.82	+0.3
3,929,224	-		Psest_3758	0.82	+2.7
3,929,374	-		Psest_3758	0.87	+0.0
3,929,457	+				-1.6
3,929,457	+				-1.8
3,929,457	+				+0.6
3,929,457	+				-0.3
3,929,457	+				+0.1
3,929,457	+				+1.4
3,929,457	+				+2.4
3,929,457	+				-2.1
3,929,458	-				-0.7
3,929,458	-				-0.3
3,929,458	-				-1.2
3,929,458	-				-0.7
3,929,458	-				+0.2
3,929,458	-				+1.6
3,929,458	-				-0.1
3,929,458	-				-0.3
3,929,458	-				-1.9
3,929,515	-				-0.3
3,929,520	-				-0.1
3,929,547	+				-1.9
3,929,622	+				+0.5
3,929,622	+				+0.9
3,929,622	+				+0.4
3,929,622	+				-0.5
3,929,622	+				-0.5
3,929,622	+				+0.2
3,929,623	-				+1.5
3,929,623	-				+2.6
3,929,623	-				-0.4
3,929,623	-				+0.5
3,929,623	-				-1.0
3,929,623	-				+2.2
3,929,623	-				-1.2
3,929,623	-				+1.1
3,929,623	-				-0.9
3,929,623	-				+0.8
3,929,623	-				+1.5
3,929,623	-				+0.0
3,929,623	-				+0.5
3,929,682	+				-1.4
3,929,737	-				+1.6
3,929,737	-				-0.2
3,929,744	-				-1.0
3,929,744	-				-0.1
3,929,745	+				-1.0
3,929,745	+				+1.0
3,929,745	+				-1.4
3,929,745	+				-1.1
3,929,745	+				+0.5
3,929,745	+				-1.5
3,929,745	+				+0.2
3,929,745	+				+1.2
3,929,745	+				-1.5
3,929,745	+				-3.3
3,929,745	+				-0.4
3,929,745	+				+0.6
3,929,745	+				-0.1
3,929,745	+				-1.2
3,929,745	+				-1.3
3,929,745	+				-1.7
3,929,745	+				+0.4
3,929,745	+				-0.4
3,929,745	+				-0.7
3,929,745	+				-0.0
3,929,746	-				+0.9
3,929,746	-				-1.9
3,929,746	-				+1.7
3,929,746	-				+0.4
3,929,746	-				+0.2
3,929,746	-				+0.5
3,929,746	-				-2.6
3,929,746	-				+2.8
3,929,746	-				+1.3
3,929,746	-				+1.2
3,929,746	-				-0.1
3,929,746	-				+0.6
3,929,746	-				-0.9
3,929,746	-				-0.4
3,929,746	-				-1.6
3,929,746	-				+0.2
3,929,746	-				-3.0
3,929,876	-		Psest_3759	0.11	-0.1
3,929,876	-		Psest_3759	0.11	+1.8
3,929,876	-		Psest_3759	0.11	+0.5
3,929,876	-		Psest_3759	0.11	+1.3
3,929,876	-		Psest_3759	0.11	-0.3
3,930,001	-		Psest_3759	0.38	+1.2
3,930,001	-		Psest_3759	0.38	+0.6
3,930,074	+		Psest_3759	0.53	+1.9
3,930,074	+		Psest_3759	0.53	+0.6
3,930,074	+		Psest_3759	0.53	+1.1
3,930,074	+		Psest_3759	0.53	-0.0
3,930,074	+		Psest_3759	0.53	-0.8
3,930,074	+		Psest_3759	0.53	+2.7
3,930,075	-		Psest_3759	0.54	+0.8
3,930,075	-		Psest_3759	0.54	+0.9
3,930,075	-		Psest_3759	0.54	+2.8
3,930,075	-		Psest_3759	0.54	+0.9
3,930,075	-		Psest_3759	0.54	+0.7
3,930,075	-		Psest_3759	0.54	+1.5
3,930,075	-		Psest_3759	0.54	+1.5
3,930,075	-		Psest_3759	0.54	-0.1
3,930,075	-		Psest_3759	0.54	+1.0
3,930,075	-		Psest_3759	0.54	-0.4
3,930,075	-		Psest_3759	0.54	+0.3
3,930,075	-		Psest_3759	0.54	+0.3
3,930,075	-		Psest_3759	0.54	-1.0
3,930,174	+		Psest_3759	0.75	-2.6
3,930,289	+				+0.5
3,930,290	-				-1.6
3,930,309	+				-1.0
3,930,310	-				+1.2
3,930,331	+				+0.8
3,930,332	-				-0.2
3,930,381	+				-0.1
3,930,381	+				-0.1
3,930,455	+				+0.4
3,930,455	+				-1.8
3,930,455	+				+0.3
3,930,456	-				-0.7
3,930,456	-				-0.9
3,930,456	-				+0.6
3,930,488	+				-0.2
3,930,488	+				+0.1
3,930,489	-				+1.6
3,930,666	+				+0.5
3,930,833	+		Psest_3761	0.37	-0.1
3,930,833	+		Psest_3761	0.37	+0.4
3,930,833	+		Psest_3761	0.37	+3.1
3,930,877	+		Psest_3761	0.48	+0.8
3,930,877	+		Psest_3761	0.48	-0.4
3,930,877	+		Psest_3761	0.48	-1.4
3,931,178	+				-0.4
3,931,179	-				+0.5
3,931,179	-				-1.1
3,931,195	+				+1.3
3,931,250	+				+0.3
3,931,250	+				+0.8
3,931,250	+				+0.2