Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2266
Experiment: Vanillin 2 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Vanillin 2 mM |
|---|---|---|---|---|---|
| remove | |||||
| 2,414,105 | - | Psest_2265 | 0.32 | +0.1 | |
| 2,414,126 | - | Psest_2265 | 0.33 | -0.9 | |
| 2,414,209 | + | Psest_2265 | 0.40 | -0.8 | |
| 2,414,441 | + | Psest_2265 | 0.59 | -0.8 | |
| 2,414,614 | - | Psest_2265 | 0.72 | -0.3 | |
| 2,414,614 | - | Psest_2265 | 0.72 | -0.9 | |
| 2,414,936 | - | +1.0 | |||
| 2,414,943 | + | +0.9 | |||
| 2,414,943 | + | +2.2 | |||
| 2,415,158 | - | Psest_2266 | 0.31 | +0.4 | |
| 2,415,228 | + | Psest_2266 | 0.51 | +0.5 | |
| 2,415,228 | + | Psest_2266 | 0.51 | -2.1 | |
| 2,415,228 | + | Psest_2266 | 0.51 | -0.2 | |
| 2,415,229 | - | Psest_2266 | 0.51 | -0.6 | |
| 2,415,229 | - | Psest_2266 | 0.51 | -0.6 | |
| 2,415,229 | - | Psest_2266 | 0.51 | -1.6 | |
| 2,415,387 | - | -0.2 | |||
| 2,415,679 | + | Psest_2267 | 0.14 | -0.1 | |
| 2,415,912 | + | Psest_2267 | 0.27 | -0.4 | |
| 2,415,912 | + | Psest_2267 | 0.27 | -2.3 | |
| 2,415,912 | + | Psest_2267 | 0.27 | -0.7 | |
| 2,416,175 | + | Psest_2267 | 0.43 | +0.6 | |
| 2,416,339 | + | Psest_2267 | 0.53 | -0.3 | |
| 2,416,339 | + | Psest_2267 | 0.53 | +0.0 |
Or see this region's nucleotide sequence