Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1074

Experiment: Vanillin 2 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillin 2 mM
1,161,543	-		Psest_1072	0.88	-1.0
1,161,580	+				+0.4
1,161,580	+				+1.1
1,161,711	+				-1.8
1,161,911	+		Psest_1073	0.32	-0.2
1,161,912	-		Psest_1073	0.32	-0.3
1,161,917	+		Psest_1073	0.33	+0.7
1,161,926	+		Psest_1073	0.34	-1.4
1,161,926	+		Psest_1073	0.34	+0.7
1,161,926	+		Psest_1073	0.34	+1.1
1,162,036	+		Psest_1073	0.53	-1.3
1,162,036	+		Psest_1073	0.53	+0.2
1,162,180	+		Psest_1073	0.77	+0.4
1,162,260	+				-0.1
1,162,260	+				-0.0
1,162,260	+				-1.8
1,162,268	+				-1.3
1,162,349	+				+1.6
1,162,349	+				+0.1
1,162,349	+				-1.3
1,162,349	+				-0.6
1,162,350	-				-1.2
1,162,397	-				-1.7
1,162,500	+				+1.0
1,162,500	+				+1.1
1,162,500	+				+0.2
1,162,501	-				-0.2
1,162,501	-				-0.5
1,162,506	+				-0.7
1,162,506	+				-3.1
1,162,506	+				+3.0
1,162,507	-				-1.6
1,162,507	-				-0.9
1,162,507	-				-0.2
1,162,507	-				+1.1
1,162,507	-				-0.1
1,162,525	-				-1.0
1,162,581	-				+0.4
1,162,872	+		Psest_1074	0.35	+2.5
1,162,872	+		Psest_1074	0.35	+1.7
1,162,872	+		Psest_1074	0.35	+0.6
1,162,873	-		Psest_1074	0.35	+1.0
1,162,965	+		Psest_1074	0.43	-0.4
1,162,965	+		Psest_1074	0.43	+2.8
1,162,965	+		Psest_1074	0.43	-0.4
1,162,965	+		Psest_1074	0.43	-0.7
1,162,966	-		Psest_1074	0.44	-1.7
1,162,966	-		Psest_1074	0.44	-0.9
1,162,966	-		Psest_1074	0.44	+0.1
1,163,003	+		Psest_1074	0.47	-1.1
1,163,151	+		Psest_1074	0.61	+0.5
1,163,151	+		Psest_1074	0.61	+3.6
1,163,152	-		Psest_1074	0.61	-0.6
1,163,188	-		Psest_1074	0.64	-0.6
1,163,188	-		Psest_1074	0.64	-0.9
1,163,188	-		Psest_1074	0.64	+2.5
1,163,191	-		Psest_1074	0.64	+0.5
1,163,191	-		Psest_1074	0.64	-1.4
1,163,191	-		Psest_1074	0.64	+2.3
1,163,238	+		Psest_1074	0.69	+4.3
1,163,287	-		Psest_1074	0.73	-0.9
1,163,358	+		Psest_1074	0.80	+0.9
1,163,361	+		Psest_1074	0.80	+2.8
1,163,361	+		Psest_1074	0.80	-0.1
1,163,362	-		Psest_1074	0.80	-0.2
1,163,969	+				+0.5
1,163,970	-				-0.2
1,164,262	+		Psest_1075	0.69	-0.2
1,164,262	+		Psest_1075	0.69	+0.1
1,164,262	+		Psest_1075	0.69	-1.0
1,164,262	+		Psest_1075	0.69	-0.6
1,164,263	-		Psest_1075	0.69	-2.2
1,164,263	-		Psest_1075	0.69	+0.5
1,164,263	-		Psest_1075	0.69	-1.7
1,164,263	-		Psest_1075	0.69	-0.7
1,164,263	-		Psest_1075	0.69	+4.7
1,164,263	-		Psest_1075	0.69	-0.5
1,164,263	-		Psest_1075	0.69	+1.8
1,164,313	+		Psest_1075	0.81	+0.7
1,164,314	-		Psest_1075	0.82	+0.3
1,164,365	+				+0.5
1,164,365	+				-2.4
1,164,365	+				+0.0
1,164,365	+				-1.3
1,164,366	-				+2.6
1,164,366	-				-2.9
1,164,370	+				+1.4
1,164,370	+				+0.7
1,164,370	+				-0.7
1,164,370	+				+1.9
1,164,370	+				+1.6
1,164,370	+				-1.2
1,164,370	+				+2.7
1,164,370	+				-1.1
1,164,370	+				+1.2
1,164,370	+				+1.6
1,164,370	+				+2.9
1,164,370	+				+1.5
1,164,370	+				-0.4
1,164,371	-				-0.7
1,164,488	+				-1.4