Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0836

Experiment: 2-Furfuraldehyde 0.05 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0835 and Psest_0836 are separated by 14 nucleotidesPsest_0836 and Psest_0837 overlap by 7 nucleotidesPsest_0837 and Psest_0838 are separated by 180 nucleotides Psest_0835: Psest_0835 - Collagenase and related proteases, at 906,277 to 907,272 _0835 Psest_0836: Psest_0836 - Collagenase and related proteases, at 907,287 to 908,177 _0836 Psest_0837: Psest_0837 - Putative lipid carrier protein, at 908,171 to 908,665 _0837 Psest_0838: Psest_0838 - Uncharacterized conserved protein, at 908,846 to 909,232 _0838 Position (kb) 907 908 909Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 906.349 kb on + strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.395 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.463 kb on - strand, within Psest_0835at 906.474 kb on + strand, within Psest_0835at 906.474 kb on + strand, within Psest_0835at 906.475 kb on - strand, within Psest_0835at 906.475 kb on - strand, within Psest_0835at 906.475 kb on - strand, within Psest_0835at 906.475 kb on - strand, within Psest_0835at 906.475 kb on - strand, within Psest_0835at 906.475 kb on - strand, within Psest_0835at 906.478 kb on + strand, within Psest_0835at 906.479 kb on - strand, within Psest_0835at 906.662 kb on - strand, within Psest_0835at 906.818 kb on - strand, within Psest_0835at 906.818 kb on - strand, within Psest_0835at 906.921 kb on - strand, within Psest_0835at 907.114 kb on + strand, within Psest_0835at 907.114 kb on + strand, within Psest_0835at 907.115 kb on - strand, within Psest_0835at 907.115 kb on - strand, within Psest_0835at 907.115 kb on - strand, within Psest_0835at 907.115 kb on - strand, within Psest_0835at 907.115 kb on - strand, within Psest_0835at 907.159 kb on + strand, within Psest_0835at 907.159 kb on + strand, within Psest_0835at 907.159 kb on + strand, within Psest_0835at 907.159 kb on + strand, within Psest_0835at 907.159 kb on + strand, within Psest_0835at 907.159 kb on + strand, within Psest_0835at 907.160 kb on - strand, within Psest_0835at 907.160 kb on - strand, within Psest_0835at 907.317 kb on + strandat 907.317 kb on + strandat 907.317 kb on + strandat 907.318 kb on - strandat 907.383 kb on + strand, within Psest_0836at 907.383 kb on + strand, within Psest_0836at 907.384 kb on - strand, within Psest_0836at 907.644 kb on + strand, within Psest_0836at 907.644 kb on + strand, within Psest_0836at 907.644 kb on + strand, within Psest_0836at 907.645 kb on - strand, within Psest_0836at 907.813 kb on - strand, within Psest_0836at 907.813 kb on - strand, within Psest_0836at 907.813 kb on - strand, within Psest_0836at 908.056 kb on + strand, within Psest_0836at 908.056 kb on + strand, within Psest_0836at 908.056 kb on + strand, within Psest_0836at 908.056 kb on + strand, within Psest_0836at 908.056 kb on + strand, within Psest_0836at 908.056 kb on + strand, within Psest_0836at 908.057 kb on - strand, within Psest_0836at 908.057 kb on - strand, within Psest_0836at 908.057 kb on - strand, within Psest_0836at 908.171 kb on - strandat 908.171 kb on - strandat 908.319 kb on + strand, within Psest_0837at 908.320 kb on - strand, within Psest_0837at 908.320 kb on - strand, within Psest_0837at 908.764 kb on + strandat 908.764 kb on + strandat 908.764 kb on + strandat 908.764 kb on + strandat 908.764 kb on + strandat 908.764 kb on + strandat 908.764 kb on + strandat 908.764 kb on + strandat 908.765 kb on - strandat 908.765 kb on - strandat 908.765 kb on - strandat 908.765 kb on - strandat 908.765 kb on - strandat 908.765 kb on - strandat 908.765 kb on - strandat 908.765 kb on - strandat 908.765 kb on - strandat 908.765 kb on - strandat 908.842 kb on + strandat 908.842 kb on + strandat 908.842 kb on + strandat 908.842 kb on + strandat 908.842 kb on + strandat 908.842 kb on + strandat 908.843 kb on - strandat 908.843 kb on - strandat 908.843 kb on - strandat 908.843 kb on - strandat 908.843 kb on - strandat 908.843 kb on - strandat 908.843 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.05 vol%
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906,349 + +1.4
906,349 + -1.4
906,349 + -0.3
906,349 + -1.5
906,349 + +0.9
906,349 + -2.7
906,349 + -0.9
906,349 + +1.3
906,349 + +1.4
906,349 + -0.1
906,349 + -0.9
906,350 - -1.4
906,350 - +1.4
906,350 - -1.5
906,350 - -1.0
906,350 - +0.5
906,350 - -1.0
906,350 - -0.3
906,350 - +0.4
906,350 - -2.3
906,350 - +0.7
906,350 - -2.2
906,350 - +1.5
906,350 - +0.6
906,350 - +1.5
906,350 - -1.5
906,395 + Psest_0835 0.12 -0.9
906,460 + Psest_0835 0.18 +0.4
906,460 + Psest_0835 0.18 -1.1
906,460 + Psest_0835 0.18 -1.4
906,460 + Psest_0835 0.18 +0.8
906,460 + Psest_0835 0.18 -0.2
906,460 + Psest_0835 0.18 -1.1
906,460 + Psest_0835 0.18 +0.3
906,460 + Psest_0835 0.18 +1.4
906,460 + Psest_0835 0.18 -1.7
906,460 + Psest_0835 0.18 +0.5
906,460 + Psest_0835 0.18 +2.0
906,460 + Psest_0835 0.18 +1.8
906,460 + Psest_0835 0.18 +0.2
906,460 + Psest_0835 0.18 -0.8
906,460 + Psest_0835 0.18 +0.7
906,460 + Psest_0835 0.18 +0.2
906,460 + Psest_0835 0.18 -0.4
906,461 - Psest_0835 0.18 +0.3
906,461 - Psest_0835 0.18 +2.3
906,461 - Psest_0835 0.18 -1.3
906,461 - Psest_0835 0.18 +1.1
906,461 - Psest_0835 0.18 +0.9
906,461 - Psest_0835 0.18 -1.1
906,461 - Psest_0835 0.18 +0.3
906,461 - Psest_0835 0.18 -0.4
906,461 - Psest_0835 0.18 -0.5
906,461 - Psest_0835 0.18 -1.5
906,461 - Psest_0835 0.18 +0.4
906,461 - Psest_0835 0.18 +0.9
906,461 - Psest_0835 0.18 -0.6
906,461 - Psest_0835 0.18 +0.2
906,461 - Psest_0835 0.18 -2.1
906,461 - Psest_0835 0.18 +1.1
906,461 - Psest_0835 0.18 +1.4
906,461 - Psest_0835 0.18 +0.2
906,461 - Psest_0835 0.18 -1.6
906,461 - Psest_0835 0.18 -0.5
906,461 - Psest_0835 0.18 -2.7
906,461 - Psest_0835 0.18 +2.5
906,461 - Psest_0835 0.18 -0.1
906,461 - Psest_0835 0.18 +1.9
906,461 - Psest_0835 0.18 -1.1
906,461 - Psest_0835 0.18 +0.3
906,461 - Psest_0835 0.18 -1.1
906,463 - Psest_0835 0.19 -3.0
906,474 + Psest_0835 0.20 -0.0
906,474 + Psest_0835 0.20 -1.1
906,475 - Psest_0835 0.20 -0.3
906,475 - Psest_0835 0.20 -0.5
906,475 - Psest_0835 0.20 +0.6
906,475 - Psest_0835 0.20 +0.0
906,475 - Psest_0835 0.20 +0.8
906,475 - Psest_0835 0.20 -0.3
906,478 + Psest_0835 0.20 -0.2
906,479 - Psest_0835 0.20 -2.6
906,662 - Psest_0835 0.39 -2.4
906,818 - Psest_0835 0.54 -0.3
906,818 - Psest_0835 0.54 +0.2
906,921 - Psest_0835 0.65 -1.4
907,114 + Psest_0835 0.84 -0.1
907,114 + Psest_0835 0.84 +0.1
907,115 - Psest_0835 0.84 -0.4
907,115 - Psest_0835 0.84 +1.4
907,115 - Psest_0835 0.84 +0.2
907,115 - Psest_0835 0.84 -1.2
907,115 - Psest_0835 0.84 +2.3
907,159 + Psest_0835 0.89 -1.7
907,159 + Psest_0835 0.89 +1.1
907,159 + Psest_0835 0.89 +0.3
907,159 + Psest_0835 0.89 -0.7
907,159 + Psest_0835 0.89 +0.7
907,159 + Psest_0835 0.89 -0.9
907,160 - Psest_0835 0.89 -0.1
907,160 - Psest_0835 0.89 +0.6
907,317 + -1.1
907,317 + +1.2
907,317 + +0.7
907,318 - -0.4
907,383 + Psest_0836 0.11 +0.0
907,383 + Psest_0836 0.11 -0.6
907,384 - Psest_0836 0.11 +0.0
907,644 + Psest_0836 0.40 -1.2
907,644 + Psest_0836 0.40 -1.0
907,644 + Psest_0836 0.40 -0.9
907,645 - Psest_0836 0.40 +0.7
907,813 - Psest_0836 0.59 -1.5
907,813 - Psest_0836 0.59 -1.4
907,813 - Psest_0836 0.59 -0.3
908,056 + Psest_0836 0.86 +0.6
908,056 + Psest_0836 0.86 -0.1
908,056 + Psest_0836 0.86 -0.9
908,056 + Psest_0836 0.86 -0.7
908,056 + Psest_0836 0.86 +0.4
908,056 + Psest_0836 0.86 -0.3
908,057 - Psest_0836 0.86 +0.4
908,057 - Psest_0836 0.86 -3.6
908,057 - Psest_0836 0.86 -1.6
908,171 - -0.8
908,171 - +0.5
908,319 + Psest_0837 0.30 +2.8
908,320 - Psest_0837 0.30 -1.4
908,320 - Psest_0837 0.30 -0.3
908,764 + -1.7
908,764 + +1.2
908,764 + -3.3
908,764 + +1.9
908,764 + +0.8
908,764 + +1.4
908,764 + +2.6
908,764 + +0.7
908,765 - -0.1
908,765 - -1.6
908,765 - -0.6
908,765 - -0.2
908,765 - +0.8
908,765 - -0.9
908,765 - -1.1
908,765 - +2.0
908,765 - -0.7
908,765 - -0.7
908,842 + -0.6
908,842 + +0.6
908,842 + -0.0
908,842 + -0.1
908,842 + -0.1
908,842 + +0.5
908,843 - -0.6
908,843 - -0.6
908,843 - -0.7
908,843 - -0.6
908,843 - -0.5
908,843 - -0.7
908,843 - -1.2

Or see this region's nucleotide sequence