Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4103

Experiment: 2-Furfuraldehyde 0.05 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4101 and Psest_4102 are separated by 40 nucleotidesPsest_4102 and Psest_4103 are separated by 119 nucleotidesPsest_4103 and Psest_4104 are separated by 152 nucleotides Psest_4101: Psest_4101 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 4,281,218 to 4,282,168 _4101 Psest_4102: Psest_4102 - peroxiredoxin, Ohr subfamily, at 4,282,209 to 4,282,637 _4102 Psest_4103: Psest_4103 - AraC-type DNA-binding domain-containing proteins, at 4,282,757 to 4,283,593 _4103 Psest_4104: Psest_4104 - formate dehydrogenase, alpha subunit, proteobacterial-type, at 4,283,746 to 4,286,820 _4104 Position (kb) 4282 4283 4284Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4281.812 kb on + strand, within Psest_4101at 4282.008 kb on + strand, within Psest_4101at 4282.008 kb on + strand, within Psest_4101at 4282.008 kb on + strand, within Psest_4101at 4282.008 kb on + strand, within Psest_4101at 4282.008 kb on + strand, within Psest_4101at 4282.008 kb on + strand, within Psest_4101at 4282.008 kb on + strand, within Psest_4101at 4282.009 kb on - strand, within Psest_4101at 4282.009 kb on - strand, within Psest_4101at 4282.009 kb on - strand, within Psest_4101at 4282.009 kb on - strand, within Psest_4101at 4282.009 kb on - strand, within Psest_4101at 4282.009 kb on - strand, within Psest_4101at 4282.009 kb on - strand, within Psest_4101at 4282.009 kb on - strand, within Psest_4101at 4282.009 kb on - strand, within Psest_4101at 4282.011 kb on + strand, within Psest_4101at 4282.012 kb on - strand, within Psest_4101at 4282.012 kb on - strand, within Psest_4101at 4282.188 kb on + strandat 4282.189 kb on - strandat 4282.230 kb on + strandat 4282.231 kb on - strandat 4282.545 kb on + strand, within Psest_4102at 4282.545 kb on + strand, within Psest_4102at 4282.545 kb on + strand, within Psest_4102at 4282.545 kb on + strand, within Psest_4102at 4282.546 kb on - strand, within Psest_4102at 4282.546 kb on - strand, within Psest_4102at 4282.546 kb on - strand, within Psest_4102at 4282.615 kb on + strandat 4282.615 kb on + strandat 4282.615 kb on + strandat 4282.691 kb on + strandat 4282.691 kb on + strandat 4282.691 kb on + strandat 4282.713 kb on + strandat 4283.411 kb on + strand, within Psest_4103at 4283.411 kb on + strand, within Psest_4103at 4283.411 kb on + strand, within Psest_4103at 4283.654 kb on + strandat 4283.654 kb on + strandat 4283.682 kb on - strandat 4283.682 kb on - strandat 4283.727 kb on + strandat 4283.728 kb on - strandat 4283.728 kb on - strandat 4283.728 kb on - strandat 4283.751 kb on + strandat 4283.752 kb on - strandat 4283.752 kb on - strandat 4283.752 kb on - strandat 4283.839 kb on + strandat 4283.839 kb on + strandat 4283.839 kb on + strandat 4283.840 kb on - strandat 4283.840 kb on - strandat 4283.840 kb on - strandat 4283.933 kb on - strandat 4284.271 kb on + strand, within Psest_4104at 4284.271 kb on + strand, within Psest_4104at 4284.271 kb on + strand, within Psest_4104at 4284.272 kb on - strand, within Psest_4104at 4284.272 kb on - strand, within Psest_4104at 4284.272 kb on - strand, within Psest_4104at 4284.272 kb on - strand, within Psest_4104at 4284.272 kb on - strand, within Psest_4104at 4284.273 kb on + strand, within Psest_4104at 4284.273 kb on + strand, within Psest_4104at 4284.305 kb on + strand, within Psest_4104at 4284.306 kb on - strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.562 kb on + strand, within Psest_4104at 4284.563 kb on - strand, within Psest_4104at 4284.563 kb on - strand, within Psest_4104at 4284.563 kb on - strand, within Psest_4104at 4284.563 kb on - strand, within Psest_4104at 4284.563 kb on - strand, within Psest_4104at 4284.563 kb on - strand, within Psest_4104at 4284.563 kb on - strand, within Psest_4104at 4284.563 kb on - strand, within Psest_4104at 4284.563 kb on - strand, within Psest_4104at 4284.563 kb on - strand, within Psest_4104at 4284.563 kb on - strand, within Psest_4104at 4284.563 kb on - strand, within Psest_4104at 4284.563 kb on - strand, within Psest_4104at 4284.563 kb on - strand, within Psest_4104at 4284.563 kb on - strand, within Psest_4104at 4284.563 kb on - strand, within Psest_4104at 4284.563 kb on - strand, within Psest_4104at 4284.563 kb on - strand, within Psest_4104at 4284.563 kb on - strand, within Psest_4104at 4284.563 kb on - strand, within Psest_4104at 4284.563 kb on - strand, within Psest_4104at 4284.563 kb on - strand, within Psest_4104at 4284.563 kb on - strand, within Psest_4104at 4284.563 kb on - strand, within Psest_4104at 4284.563 kb on - strand, within Psest_4104at 4284.563 kb on - strand, within Psest_4104at 4284.563 kb on - strand, within Psest_4104at 4284.563 kb on - strand, within Psest_4104at 4284.563 kb on - strand, within Psest_4104at 4284.563 kb on - strand, within Psest_4104at 4284.563 kb on - strand, within Psest_4104at 4284.563 kb on - strand, within Psest_4104

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.05 vol%
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4,281,812 + Psest_4101 0.62 -0.3
4,282,008 + Psest_4101 0.83 -0.8
4,282,008 + Psest_4101 0.83 +1.5
4,282,008 + Psest_4101 0.83 -1.1
4,282,008 + Psest_4101 0.83 -0.3
4,282,008 + Psest_4101 0.83 +0.1
4,282,008 + Psest_4101 0.83 -0.7
4,282,008 + Psest_4101 0.83 +1.1
4,282,009 - Psest_4101 0.83 +0.6
4,282,009 - Psest_4101 0.83 +2.1
4,282,009 - Psest_4101 0.83 +1.0
4,282,009 - Psest_4101 0.83 +1.0
4,282,009 - Psest_4101 0.83 +0.5
4,282,009 - Psest_4101 0.83 -1.6
4,282,009 - Psest_4101 0.83 +0.2
4,282,009 - Psest_4101 0.83 +1.4
4,282,009 - Psest_4101 0.83 +1.0
4,282,011 + Psest_4101 0.83 -2.5
4,282,012 - Psest_4101 0.83 -2.0
4,282,012 - Psest_4101 0.83 -1.2
4,282,188 + +1.2
4,282,189 - +0.6
4,282,230 + +1.6
4,282,231 - +0.9
4,282,545 + Psest_4102 0.78 +0.9
4,282,545 + Psest_4102 0.78 -2.1
4,282,545 + Psest_4102 0.78 -1.4
4,282,545 + Psest_4102 0.78 -0.3
4,282,546 - Psest_4102 0.79 -1.2
4,282,546 - Psest_4102 0.79 +0.3
4,282,546 - Psest_4102 0.79 +0.9
4,282,615 + -0.1
4,282,615 + +2.7
4,282,615 + -0.2
4,282,691 + -0.8
4,282,691 + +0.1
4,282,691 + +1.5
4,282,713 + -1.9
4,283,411 + Psest_4103 0.78 +2.1
4,283,411 + Psest_4103 0.78 +1.2
4,283,411 + Psest_4103 0.78 -1.3
4,283,654 + +1.1
4,283,654 + +0.1
4,283,682 - +1.1
4,283,682 - -3.2
4,283,727 + -1.3
4,283,728 - -0.1
4,283,728 - +0.2
4,283,728 - +1.8
4,283,751 + +1.6
4,283,752 - +0.2
4,283,752 - -0.7
4,283,752 - -0.9
4,283,839 + +2.4
4,283,839 + +1.3
4,283,839 + -1.1
4,283,840 - +0.4
4,283,840 - +1.0
4,283,840 - -1.5
4,283,933 - -1.2
4,284,271 + Psest_4104 0.17 +0.3
4,284,271 + Psest_4104 0.17 -0.1
4,284,271 + Psest_4104 0.17 -0.2
4,284,272 - Psest_4104 0.17 -0.2
4,284,272 - Psest_4104 0.17 -0.9
4,284,272 - Psest_4104 0.17 +0.5
4,284,272 - Psest_4104 0.17 -0.4
4,284,272 - Psest_4104 0.17 -1.4
4,284,273 + Psest_4104 0.17 +0.6
4,284,273 + Psest_4104 0.17 +0.5
4,284,305 + Psest_4104 0.18 -1.6
4,284,306 - Psest_4104 0.18 -0.3
4,284,562 + Psest_4104 0.27 -0.5
4,284,562 + Psest_4104 0.27 +0.8
4,284,562 + Psest_4104 0.27 +0.2
4,284,562 + Psest_4104 0.27 -0.2
4,284,562 + Psest_4104 0.27 -0.1
4,284,562 + Psest_4104 0.27 -0.4
4,284,562 + Psest_4104 0.27 -0.6
4,284,562 + Psest_4104 0.27 -0.0
4,284,562 + Psest_4104 0.27 +0.2
4,284,562 + Psest_4104 0.27 +1.5
4,284,562 + Psest_4104 0.27 -0.9
4,284,562 + Psest_4104 0.27 +1.4
4,284,562 + Psest_4104 0.27 -2.7
4,284,562 + Psest_4104 0.27 +0.7
4,284,562 + Psest_4104 0.27 -1.9
4,284,562 + Psest_4104 0.27 +1.2
4,284,562 + Psest_4104 0.27 +0.4
4,284,562 + Psest_4104 0.27 +0.4
4,284,562 + Psest_4104 0.27 +0.5
4,284,562 + Psest_4104 0.27 -0.5
4,284,562 + Psest_4104 0.27 +2.4
4,284,562 + Psest_4104 0.27 -1.4
4,284,562 + Psest_4104 0.27 -0.7
4,284,562 + Psest_4104 0.27 +1.7
4,284,562 + Psest_4104 0.27 +0.7
4,284,562 + Psest_4104 0.27 -0.8
4,284,562 + Psest_4104 0.27 -1.6
4,284,562 + Psest_4104 0.27 -0.8
4,284,562 + Psest_4104 0.27 -1.8
4,284,562 + Psest_4104 0.27 +1.3
4,284,562 + Psest_4104 0.27 -0.9
4,284,562 + Psest_4104 0.27 +1.5
4,284,562 + Psest_4104 0.27 +1.5
4,284,562 + Psest_4104 0.27 -0.5
4,284,562 + Psest_4104 0.27 +1.0
4,284,562 + Psest_4104 0.27 +0.8
4,284,562 + Psest_4104 0.27 +0.7
4,284,562 + Psest_4104 0.27 -1.9
4,284,562 + Psest_4104 0.27 -1.2
4,284,562 + Psest_4104 0.27 +1.2
4,284,562 + Psest_4104 0.27 -1.9
4,284,562 + Psest_4104 0.27 +1.9
4,284,562 + Psest_4104 0.27 -0.6
4,284,563 - Psest_4104 0.27 +0.7
4,284,563 - Psest_4104 0.27 +0.1
4,284,563 - Psest_4104 0.27 -1.3
4,284,563 - Psest_4104 0.27 +0.0
4,284,563 - Psest_4104 0.27 -0.4
4,284,563 - Psest_4104 0.27 -0.7
4,284,563 - Psest_4104 0.27 -0.9
4,284,563 - Psest_4104 0.27 +1.7
4,284,563 - Psest_4104 0.27 +3.0
4,284,563 - Psest_4104 0.27 +0.1
4,284,563 - Psest_4104 0.27 +1.1
4,284,563 - Psest_4104 0.27 -0.0
4,284,563 - Psest_4104 0.27 +1.0
4,284,563 - Psest_4104 0.27 +0.4
4,284,563 - Psest_4104 0.27 -1.3
4,284,563 - Psest_4104 0.27 -0.2
4,284,563 - Psest_4104 0.27 +0.3
4,284,563 - Psest_4104 0.27 +1.0
4,284,563 - Psest_4104 0.27 +2.5
4,284,563 - Psest_4104 0.27 -1.1
4,284,563 - Psest_4104 0.27 +2.1
4,284,563 - Psest_4104 0.27 +1.8
4,284,563 - Psest_4104 0.27 +2.1
4,284,563 - Psest_4104 0.27 +0.6
4,284,563 - Psest_4104 0.27 -0.4
4,284,563 - Psest_4104 0.27 -2.2
4,284,563 - Psest_4104 0.27 -0.0
4,284,563 - Psest_4104 0.27 -0.2
4,284,563 - Psest_4104 0.27 -0.6
4,284,563 - Psest_4104 0.27 +1.4
4,284,563 - Psest_4104 0.27 +0.4
4,284,563 - Psest_4104 0.27 +0.1

Or see this region's nucleotide sequence