Experiment: 2-Furfuraldehyde 0.05 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3976 and Psest_3977 are separated by 645 nucleotides Psest_3977 and Psest_3978 are separated by 499 nucleotides
Psest_3976: Psest_3976 - PAS domain S-box, at 4,142,841 to 4,144,787
_3976
Psest_3977: Psest_3977 - Cold shock proteins, at 4,145,433 to 4,145,645
_3977
Psest_3978: Psest_3978 - hypothetical protein, at 4,146,145 to 4,147,356
_3978
Position (kb)
4145
4146 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4144.964 kb on + strand at 4144.964 kb on + strand at 4144.969 kb on + strand at 4144.970 kb on - strand at 4145.016 kb on + strand at 4145.091 kb on + strand at 4145.111 kb on - strand at 4145.111 kb on - strand at 4145.111 kb on - strand at 4145.140 kb on + strand at 4145.141 kb on - strand at 4145.141 kb on - strand at 4145.145 kb on - strand at 4145.145 kb on - strand at 4145.145 kb on - strand at 4145.163 kb on - strand at 4145.191 kb on + strand at 4145.203 kb on - strand at 4145.203 kb on - strand at 4145.206 kb on + strand at 4145.269 kb on + strand at 4145.269 kb on + strand at 4145.270 kb on - strand at 4145.270 kb on - strand at 4145.270 kb on - strand at 4145.274 kb on - strand at 4145.276 kb on - strand at 4145.276 kb on - strand at 4145.283 kb on + strand at 4145.428 kb on + strand at 4145.428 kb on + strand at 4145.428 kb on + strand at 4145.429 kb on - strand at 4145.429 kb on - strand at 4145.438 kb on + strand at 4145.438 kb on + strand at 4145.438 kb on + strand at 4145.438 kb on + strand at 4145.438 kb on + strand at 4145.439 kb on - strand at 4145.439 kb on - strand at 4145.439 kb on - strand at 4145.459 kb on + strand, within Psest_3977 at 4145.459 kb on + strand, within Psest_3977 at 4145.459 kb on + strand, within Psest_3977 at 4145.459 kb on + strand, within Psest_3977 at 4145.459 kb on + strand, within Psest_3977 at 4145.459 kb on + strand, within Psest_3977 at 4145.459 kb on + strand, within Psest_3977 at 4145.459 kb on + strand, within Psest_3977 at 4145.459 kb on + strand, within Psest_3977 at 4145.459 kb on + strand, within Psest_3977 at 4145.460 kb on - strand, within Psest_3977 at 4145.460 kb on - strand, within Psest_3977 at 4145.460 kb on - strand, within Psest_3977 at 4145.460 kb on - strand, within Psest_3977 at 4145.460 kb on - strand, within Psest_3977 at 4145.460 kb on - strand, within Psest_3977 at 4145.460 kb on - strand, within Psest_3977 at 4145.492 kb on + strand, within Psest_3977 at 4145.492 kb on + strand, within Psest_3977 at 4145.493 kb on - strand, within Psest_3977 at 4145.496 kb on - strand, within Psest_3977 at 4145.738 kb on + strand at 4145.738 kb on + strand at 4145.738 kb on + strand at 4145.738 kb on + strand at 4145.738 kb on + strand at 4145.738 kb on + strand at 4145.738 kb on + strand at 4145.739 kb on - strand at 4145.739 kb on - strand at 4145.739 kb on - strand at 4145.739 kb on - strand at 4145.739 kb on - strand at 4145.739 kb on - strand at 4145.739 kb on - strand at 4145.739 kb on - strand at 4145.739 kb on - strand at 4145.739 kb on - strand at 4145.920 kb on + strand at 4145.920 kb on + strand at 4145.920 kb on + strand at 4145.920 kb on + strand at 4145.920 kb on + strand at 4145.921 kb on - strand at 4145.921 kb on - strand at 4145.921 kb on - strand at 4145.925 kb on + strand at 4145.925 kb on + strand at 4145.925 kb on + strand at 4145.925 kb on + strand at 4145.926 kb on - strand at 4145.926 kb on - strand at 4145.926 kb on - strand at 4145.926 kb on - strand at 4145.926 kb on - strand at 4145.926 kb on - strand at 4145.929 kb on + strand at 4145.929 kb on + strand at 4145.929 kb on + strand at 4145.929 kb on + strand at 4145.929 kb on + strand at 4145.929 kb on + strand at 4145.929 kb on + strand at 4145.929 kb on + strand at 4145.929 kb on + strand at 4145.929 kb on + strand at 4145.929 kb on + strand at 4145.930 kb on - strand at 4145.930 kb on - strand at 4145.930 kb on - strand at 4145.930 kb on - strand at 4145.930 kb on - strand at 4145.930 kb on - strand at 4145.930 kb on - strand at 4145.930 kb on - strand at 4145.930 kb on - strand at 4145.930 kb on - strand at 4145.930 kb on - strand at 4145.930 kb on - strand at 4145.930 kb on - strand at 4145.930 kb on - strand at 4145.973 kb on + strand at 4145.973 kb on + strand at 4145.973 kb on + strand at 4145.973 kb on + strand at 4145.973 kb on + strand at 4145.973 kb on + strand at 4145.974 kb on - strand at 4145.974 kb on - strand at 4145.974 kb on - strand at 4145.974 kb on - strand at 4145.974 kb on - strand at 4145.974 kb on - strand at 4145.974 kb on - strand at 4145.974 kb on - strand at 4145.991 kb on + strand at 4145.991 kb on + strand at 4145.991 kb on + strand at 4145.991 kb on + strand at 4145.991 kb on + strand at 4145.991 kb on + strand at 4145.991 kb on + strand at 4145.991 kb on + strand at 4145.992 kb on - strand at 4145.992 kb on - strand at 4145.992 kb on - strand at 4145.992 kb on - strand at 4145.992 kb on - strand at 4145.992 kb on - strand at 4145.992 kb on - strand at 4145.992 kb on - strand at 4145.992 kb on - strand at 4145.992 kb on - strand at 4145.992 kb on - strand at 4145.992 kb on - strand at 4146.055 kb on - strand at 4146.143 kb on + strand at 4146.143 kb on + strand at 4146.144 kb on - strand at 4146.144 kb on - strand at 4146.144 kb on - strand at 4146.146 kb on + strand at 4146.146 kb on + strand at 4146.146 kb on + strand at 4146.146 kb on + strand at 4146.146 kb on + strand at 4146.146 kb on + strand at 4146.146 kb on + strand at 4146.147 kb on - strand at 4146.147 kb on - strand at 4146.147 kb on - strand at 4146.263 kb on + strand at 4146.263 kb on + strand at 4146.263 kb on + strand at 4146.263 kb on + strand at 4146.263 kb on + strand at 4146.263 kb on + strand at 4146.263 kb on + strand at 4146.263 kb on + strand at 4146.263 kb on + strand at 4146.263 kb on + strand at 4146.263 kb on + strand at 4146.263 kb on + strand at 4146.264 kb on - strand at 4146.264 kb on - strand at 4146.264 kb on - strand at 4146.341 kb on + strand, within Psest_3978 at 4146.341 kb on + strand, within Psest_3978 at 4146.342 kb on - strand, within Psest_3978 at 4146.342 kb on - strand, within Psest_3978 at 4146.342 kb on - strand, within Psest_3978 at 4146.342 kb on - strand, within Psest_3978 at 4146.347 kb on + strand, within Psest_3978 at 4146.347 kb on + strand, within Psest_3978 at 4146.347 kb on + strand, within Psest_3978 at 4146.348 kb on - strand, within Psest_3978 at 4146.348 kb on - strand, within Psest_3978 at 4146.348 kb on - strand, within Psest_3978 at 4146.348 kb on - strand, within Psest_3978 at 4146.348 kb on - strand, within Psest_3978 at 4146.378 kb on - strand, within Psest_3978 at 4146.475 kb on - strand, within Psest_3978 at 4146.475 kb on - strand, within Psest_3978 at 4146.475 kb on - strand, within Psest_3978 at 4146.475 kb on - strand, within Psest_3978 at 4146.543 kb on - strand, within Psest_3978 at 4146.543 kb on - strand, within Psest_3978
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.05 vol% remove 4,144,964 + +0.9 4,144,964 + +0.6 4,144,969 + -1.6 4,144,970 - +0.2 4,145,016 + +0.5 4,145,091 + +0.2 4,145,111 - +1.1 4,145,111 - -0.8 4,145,111 - -0.5 4,145,140 + -0.2 4,145,141 - +0.1 4,145,141 - -0.3 4,145,145 - +0.4 4,145,145 - +0.8 4,145,145 - +0.0 4,145,163 - +0.3 4,145,191 + +2.5 4,145,203 - +1.7 4,145,203 - -1.8 4,145,206 + -3.1 4,145,269 + +0.8 4,145,269 + +1.0 4,145,270 - +0.3 4,145,270 - -1.1 4,145,270 - +0.5 4,145,274 - +1.7 4,145,276 - +2.3 4,145,276 - -0.5 4,145,283 + -1.8 4,145,428 + +0.7 4,145,428 + -1.5 4,145,428 + -0.6 4,145,429 - +0.5 4,145,429 - -0.5 4,145,438 + +0.1 4,145,438 + +0.6 4,145,438 + -0.4 4,145,438 + +0.6 4,145,438 + +0.5 4,145,439 - -2.2 4,145,439 - +0.7 4,145,439 - -0.6 4,145,459 + Psest_3977 0.12 -1.3 4,145,459 + Psest_3977 0.12 -1.1 4,145,459 + Psest_3977 0.12 +1.6 4,145,459 + Psest_3977 0.12 -0.8 4,145,459 + Psest_3977 0.12 -0.5 4,145,459 + Psest_3977 0.12 -0.1 4,145,459 + Psest_3977 0.12 +0.2 4,145,459 + Psest_3977 0.12 +2.8 4,145,459 + Psest_3977 0.12 +1.0 4,145,459 + Psest_3977 0.12 +1.7 4,145,460 - Psest_3977 0.13 -0.1 4,145,460 - Psest_3977 0.13 +0.3 4,145,460 - Psest_3977 0.13 -1.7 4,145,460 - Psest_3977 0.13 -1.0 4,145,460 - Psest_3977 0.13 +0.6 4,145,460 - Psest_3977 0.13 -0.6 4,145,460 - Psest_3977 0.13 +0.7 4,145,492 + Psest_3977 0.28 -1.9 4,145,492 + Psest_3977 0.28 -1.1 4,145,493 - Psest_3977 0.28 +0.2 4,145,496 - Psest_3977 0.30 +0.3 4,145,738 + +2.1 4,145,738 + -0.9 4,145,738 + -1.2 4,145,738 + -0.7 4,145,738 + +0.4 4,145,738 + -2.8 4,145,738 + +0.2 4,145,739 - +2.5 4,145,739 - +2.1 4,145,739 - -0.6 4,145,739 - -0.3 4,145,739 - -0.7 4,145,739 - +0.5 4,145,739 - -1.0 4,145,739 - -0.1 4,145,739 - -3.0 4,145,739 - -0.5 4,145,920 + -0.2 4,145,920 + -0.0 4,145,920 + +1.0 4,145,920 + -2.0 4,145,920 + -0.6 4,145,921 - +0.2 4,145,921 - +0.1 4,145,921 - +0.1 4,145,925 + -2.0 4,145,925 + -0.8 4,145,925 + +0.8 4,145,925 + +0.2 4,145,926 - +2.1 4,145,926 - +1.7 4,145,926 - +0.3 4,145,926 - -0.2 4,145,926 - -0.3 4,145,926 - +1.6 4,145,929 + -0.1 4,145,929 + +2.2 4,145,929 + +0.5 4,145,929 + +1.3 4,145,929 + -0.2 4,145,929 + +0.2 4,145,929 + +0.9 4,145,929 + +0.6 4,145,929 + +0.3 4,145,929 + +0.2 4,145,929 + +0.4 4,145,930 - +2.0 4,145,930 - -2.4 4,145,930 - -0.2 4,145,930 - -1.5 4,145,930 - -0.3 4,145,930 - +0.5 4,145,930 - -1.0 4,145,930 - +0.6 4,145,930 - -0.5 4,145,930 - +0.6 4,145,930 - -0.8 4,145,930 - -0.0 4,145,930 - +0.8 4,145,930 - -1.1 4,145,973 + -1.1 4,145,973 + -0.2 4,145,973 + +1.8 4,145,973 + -0.8 4,145,973 + -0.5 4,145,973 + -0.8 4,145,974 - -1.5 4,145,974 - -0.4 4,145,974 - +0.3 4,145,974 - +0.7 4,145,974 - +1.6 4,145,974 - -1.2 4,145,974 - +2.7 4,145,974 - -0.7 4,145,991 + -1.4 4,145,991 + +2.0 4,145,991 + +1.0 4,145,991 + +1.2 4,145,991 + -2.3 4,145,991 + +0.7 4,145,991 + -0.9 4,145,991 + -0.3 4,145,992 - -0.3 4,145,992 - +0.0 4,145,992 - +1.3 4,145,992 - +1.1 4,145,992 - +0.4 4,145,992 - -1.0 4,145,992 - +1.8 4,145,992 - -1.1 4,145,992 - +1.3 4,145,992 - -1.1 4,145,992 - +3.4 4,145,992 - -2.2 4,146,055 - +2.3 4,146,143 + +0.7 4,146,143 + +1.5 4,146,144 - +0.8 4,146,144 - +0.1 4,146,144 - -0.8 4,146,146 + +0.1 4,146,146 + -0.4 4,146,146 + -1.1 4,146,146 + +0.1 4,146,146 + -0.3 4,146,146 + +3.3 4,146,146 + -0.1 4,146,147 - +0.5 4,146,147 - +0.2 4,146,147 - -1.4 4,146,263 + -1.5 4,146,263 + +1.0 4,146,263 + -1.0 4,146,263 + -1.0 4,146,263 + -0.1 4,146,263 + -0.3 4,146,263 + -1.6 4,146,263 + +0.9 4,146,263 + -0.1 4,146,263 + +2.7 4,146,263 + -0.9 4,146,263 + -0.9 4,146,264 - +0.7 4,146,264 - -1.1 4,146,264 - +1.6 4,146,341 + Psest_3978 0.16 +0.3 4,146,341 + Psest_3978 0.16 -0.2 4,146,342 - Psest_3978 0.16 -0.2 4,146,342 - Psest_3978 0.16 -0.9 4,146,342 - Psest_3978 0.16 +1.5 4,146,342 - Psest_3978 0.16 -0.3 4,146,347 + Psest_3978 0.17 -3.1 4,146,347 + Psest_3978 0.17 +1.3 4,146,347 + Psest_3978 0.17 -0.8 4,146,348 - Psest_3978 0.17 -1.0 4,146,348 - Psest_3978 0.17 -3.0 4,146,348 - Psest_3978 0.17 +1.2 4,146,348 - Psest_3978 0.17 -0.5 4,146,348 - Psest_3978 0.17 +0.6 4,146,378 - Psest_3978 0.19 +1.5 4,146,475 - Psest_3978 0.27 +0.6 4,146,475 - Psest_3978 0.27 -0.6 4,146,475 - Psest_3978 0.27 -2.4 4,146,475 - Psest_3978 0.27 +0.2 4,146,543 - Psest_3978 0.33 -2.1 4,146,543 - Psest_3978 0.33 -0.3
Or see this region's nucleotide sequence