Experiment: 2-Furfuraldehyde 0.05 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3534 and Psest_3535 are separated by 5 nucleotides Psest_3535 and Psest_3536 are separated by 107 nucleotides Psest_3536 and Psest_3537 are separated by 119 nucleotides Psest_3537 and Psest_3538 overlap by 16 nucleotides
Psest_3534: Psest_3534 - Signal transduction histidine kinase, at 3,712,513 to 3,713,829
_3534
Psest_3535: Psest_3535 - hypothetical protein, at 3,713,835 to 3,714,050
_3535
Psest_3536: Psest_3536 - hypothetical protein, at 3,714,158 to 3,714,256
_3536
Psest_3537: Psest_3537 - hypothetical protein, at 3,714,376 to 3,715,248
_3537
Psest_3538: Psest_3538 - hypothetical protein, at 3,715,233 to 3,716,282
_3538
Position (kb)
3714
3715 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3713.268 kb on - strand, within Psest_3534 at 3713.890 kb on - strand, within Psest_3535 at 3713.890 kb on - strand, within Psest_3535 at 3713.902 kb on - strand, within Psest_3535 at 3714.020 kb on + strand, within Psest_3535 at 3714.061 kb on + strand at 3714.061 kb on + strand at 3714.061 kb on + strand at 3714.061 kb on + strand at 3714.092 kb on + strand at 3714.092 kb on + strand at 3714.092 kb on + strand at 3714.180 kb on + strand, within Psest_3536 at 3714.181 kb on - strand, within Psest_3536 at 3714.303 kb on + strand at 3714.306 kb on - strand at 3714.310 kb on - strand at 3714.349 kb on + strand at 3714.349 kb on + strand at 3714.349 kb on + strand at 3714.535 kb on + strand, within Psest_3537 at 3714.568 kb on + strand, within Psest_3537 at 3714.568 kb on + strand, within Psest_3537 at 3714.568 kb on + strand, within Psest_3537 at 3714.568 kb on + strand, within Psest_3537 at 3714.568 kb on + strand, within Psest_3537 at 3714.568 kb on + strand, within Psest_3537 at 3714.568 kb on + strand, within Psest_3537 at 3714.569 kb on - strand, within Psest_3537 at 3714.569 kb on - strand, within Psest_3537 at 3714.722 kb on + strand, within Psest_3537 at 3714.758 kb on + strand, within Psest_3537 at 3714.758 kb on + strand, within Psest_3537 at 3714.759 kb on - strand, within Psest_3537 at 3714.811 kb on + strand, within Psest_3537 at 3715.107 kb on - strand, within Psest_3537 at 3715.138 kb on + strand, within Psest_3537 at 3715.138 kb on + strand, within Psest_3537 at 3715.138 kb on + strand, within Psest_3537 at 3715.139 kb on - strand, within Psest_3537 at 3715.240 kb on + strand at 3715.240 kb on + strand at 3715.240 kb on + strand at 3715.240 kb on + strand at 3715.241 kb on - strand at 3715.241 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.05 vol% remove 3,713,268 - Psest_3534 0.57 +0.3 3,713,890 - Psest_3535 0.25 -1.3 3,713,890 - Psest_3535 0.25 +0.6 3,713,902 - Psest_3535 0.31 -1.2 3,714,020 + Psest_3535 0.86 -0.2 3,714,061 + -1.2 3,714,061 + -3.1 3,714,061 + +0.3 3,714,061 + -1.6 3,714,092 + -3.4 3,714,092 + +1.0 3,714,092 + -1.5 3,714,180 + Psest_3536 0.22 +1.2 3,714,181 - Psest_3536 0.23 +3.1 3,714,303 + -0.7 3,714,306 - -1.5 3,714,310 - +0.8 3,714,349 + +2.6 3,714,349 + -1.3 3,714,349 + -0.7 3,714,535 + Psest_3537 0.18 -1.4 3,714,568 + Psest_3537 0.22 -0.2 3,714,568 + Psest_3537 0.22 +0.1 3,714,568 + Psest_3537 0.22 -0.7 3,714,568 + Psest_3537 0.22 -0.4 3,714,568 + Psest_3537 0.22 -0.3 3,714,568 + Psest_3537 0.22 -0.5 3,714,568 + Psest_3537 0.22 +0.3 3,714,569 - Psest_3537 0.22 -0.7 3,714,569 - Psest_3537 0.22 +0.8 3,714,722 + Psest_3537 0.40 -1.6 3,714,758 + Psest_3537 0.44 +0.2 3,714,758 + Psest_3537 0.44 -1.0 3,714,759 - Psest_3537 0.44 -0.8 3,714,811 + Psest_3537 0.50 +1.0 3,715,107 - Psest_3537 0.84 -0.2 3,715,138 + Psest_3537 0.87 -0.1 3,715,138 + Psest_3537 0.87 -1.3 3,715,138 + Psest_3537 0.87 -1.3 3,715,139 - Psest_3537 0.87 +0.4 3,715,240 + +0.2 3,715,240 + -0.7 3,715,240 + +1.4 3,715,240 + -0.2 3,715,241 - +1.3 3,715,241 - +0.6
Or see this region's nucleotide sequence