Experiment: 2-Furfuraldehyde 0.05 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2916 and Psest_2917 are separated by 77 nucleotides Psest_2917 and Psest_2918 are separated by 129 nucleotides Psest_2918 and Psest_2919 are separated by 78 nucleotides Psest_2919 and Psest_2920 are separated by 25 nucleotides
Psest_2916: Psest_2916 - hypothetical protein, at 3,109,707 to 3,109,886
_2916
Psest_2917: Psest_2917 - 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases, at 3,109,964 to 3,110,689
_2917
Psest_2918: Psest_2918 - amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-), at 3,110,819 to 3,111,589
_2918
Psest_2919: Psest_2919 - hypothetical protein, at 3,111,668 to 3,112,216
_2919
Psest_2920: Psest_2920 - hypothetical protein, at 3,112,242 to 3,112,430
_2920
Position (kb)
3110
3111
3112 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3110.036 kb on + strand at 3110.036 kb on + strand at 3110.036 kb on + strand at 3110.036 kb on + strand at 3110.036 kb on + strand at 3110.036 kb on + strand at 3110.036 kb on + strand at 3110.036 kb on + strand at 3110.036 kb on + strand at 3110.036 kb on + strand at 3110.036 kb on + strand at 3110.036 kb on + strand at 3110.036 kb on + strand at 3110.036 kb on + strand at 3110.036 kb on - strand at 3110.037 kb on - strand, within Psest_2917 at 3110.037 kb on - strand, within Psest_2917 at 3110.037 kb on - strand, within Psest_2917 at 3110.037 kb on - strand, within Psest_2917 at 3110.037 kb on - strand, within Psest_2917 at 3110.405 kb on + strand, within Psest_2917 at 3110.405 kb on + strand, within Psest_2917 at 3110.405 kb on + strand, within Psest_2917 at 3110.405 kb on + strand, within Psest_2917 at 3110.405 kb on + strand, within Psest_2917 at 3110.405 kb on + strand, within Psest_2917 at 3110.405 kb on + strand, within Psest_2917 at 3110.405 kb on + strand, within Psest_2917 at 3110.405 kb on + strand, within Psest_2917 at 3110.406 kb on - strand, within Psest_2917 at 3110.406 kb on - strand, within Psest_2917 at 3110.406 kb on - strand, within Psest_2917 at 3110.741 kb on - strand at 3110.898 kb on - strand, within Psest_2918 at 3111.182 kb on + strand, within Psest_2918 at 3111.183 kb on - strand, within Psest_2918 at 3111.375 kb on - strand, within Psest_2918 at 3111.375 kb on - strand, within Psest_2918 at 3111.375 kb on - strand, within Psest_2918 at 3111.428 kb on + strand, within Psest_2918 at 3111.428 kb on + strand, within Psest_2918 at 3111.429 kb on - strand, within Psest_2918 at 3111.429 kb on - strand, within Psest_2918 at 3111.538 kb on - strand at 3111.584 kb on + strand at 3111.585 kb on - strand at 3111.597 kb on + strand at 3111.598 kb on - strand at 3111.656 kb on - strand at 3111.656 kb on - strand at 3111.773 kb on + strand, within Psest_2919 at 3111.774 kb on - strand, within Psest_2919 at 3111.830 kb on + strand, within Psest_2919 at 3111.831 kb on - strand, within Psest_2919 at 3111.897 kb on - strand, within Psest_2919 at 3111.897 kb on - strand, within Psest_2919 at 3112.001 kb on + strand, within Psest_2919 at 3112.002 kb on - strand, within Psest_2919 at 3112.010 kb on + strand, within Psest_2919 at 3112.010 kb on + strand, within Psest_2919 at 3112.010 kb on + strand, within Psest_2919 at 3112.010 kb on + strand, within Psest_2919 at 3112.010 kb on + strand, within Psest_2919 at 3112.010 kb on + strand, within Psest_2919 at 3112.010 kb on + strand, within Psest_2919 at 3112.010 kb on + strand, within Psest_2919 at 3112.011 kb on - strand, within Psest_2919 at 3112.011 kb on - strand, within Psest_2919 at 3112.011 kb on - strand, within Psest_2919 at 3112.011 kb on - strand, within Psest_2919 at 3112.011 kb on - strand, within Psest_2919 at 3112.044 kb on + strand, within Psest_2919 at 3112.044 kb on + strand, within Psest_2919 at 3112.045 kb on - strand, within Psest_2919 at 3112.058 kb on + strand, within Psest_2919 at 3112.058 kb on + strand, within Psest_2919 at 3112.173 kb on - strand at 3112.173 kb on - strand at 3112.218 kb on + strand at 3112.219 kb on - strand at 3112.392 kb on + strand, within Psest_2920 at 3112.579 kb on - strand at 3112.579 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.05 vol% remove 3,110,036 + -0.4 3,110,036 + -0.2 3,110,036 + +1.6 3,110,036 + +1.6 3,110,036 + -0.4 3,110,036 + -0.1 3,110,036 + +1.0 3,110,036 + -0.9 3,110,036 + -0.8 3,110,036 + -0.1 3,110,036 + +2.3 3,110,036 + +1.1 3,110,036 + +0.5 3,110,036 + +2.0 3,110,036 - +0.9 3,110,037 - Psest_2917 0.10 +1.4 3,110,037 - Psest_2917 0.10 +2.3 3,110,037 - Psest_2917 0.10 -1.9 3,110,037 - Psest_2917 0.10 -0.8 3,110,037 - Psest_2917 0.10 +0.9 3,110,405 + Psest_2917 0.61 -0.2 3,110,405 + Psest_2917 0.61 +3.1 3,110,405 + Psest_2917 0.61 +0.7 3,110,405 + Psest_2917 0.61 +0.8 3,110,405 + Psest_2917 0.61 +1.6 3,110,405 + Psest_2917 0.61 -0.0 3,110,405 + Psest_2917 0.61 -0.1 3,110,405 + Psest_2917 0.61 +0.6 3,110,405 + Psest_2917 0.61 -2.4 3,110,406 - Psest_2917 0.61 +2.1 3,110,406 - Psest_2917 0.61 +0.9 3,110,406 - Psest_2917 0.61 +0.6 3,110,741 - -2.8 3,110,898 - Psest_2918 0.10 -2.4 3,111,182 + Psest_2918 0.47 -0.2 3,111,183 - Psest_2918 0.47 +1.2 3,111,375 - Psest_2918 0.72 -0.6 3,111,375 - Psest_2918 0.72 -1.1 3,111,375 - Psest_2918 0.72 +0.1 3,111,428 + Psest_2918 0.79 +0.8 3,111,428 + Psest_2918 0.79 -1.0 3,111,429 - Psest_2918 0.79 -0.7 3,111,429 - Psest_2918 0.79 -0.6 3,111,538 - -0.9 3,111,584 + +1.4 3,111,585 - -1.5 3,111,597 + -0.4 3,111,598 - +0.5 3,111,656 - +0.5 3,111,656 - +0.5 3,111,773 + Psest_2919 0.19 -0.4 3,111,774 - Psest_2919 0.19 -0.0 3,111,830 + Psest_2919 0.30 +3.2 3,111,831 - Psest_2919 0.30 +0.4 3,111,897 - Psest_2919 0.42 -2.4 3,111,897 - Psest_2919 0.42 -2.3 3,112,001 + Psest_2919 0.61 -0.8 3,112,002 - Psest_2919 0.61 +0.7 3,112,010 + Psest_2919 0.62 +0.3 3,112,010 + Psest_2919 0.62 -1.0 3,112,010 + Psest_2919 0.62 -0.2 3,112,010 + Psest_2919 0.62 -1.6 3,112,010 + Psest_2919 0.62 +0.5 3,112,010 + Psest_2919 0.62 -0.4 3,112,010 + Psest_2919 0.62 +0.5 3,112,010 + Psest_2919 0.62 -1.9 3,112,011 - Psest_2919 0.62 +3.7 3,112,011 - Psest_2919 0.62 -1.5 3,112,011 - Psest_2919 0.62 -0.5 3,112,011 - Psest_2919 0.62 +1.0 3,112,011 - Psest_2919 0.62 -0.9 3,112,044 + Psest_2919 0.68 -2.2 3,112,044 + Psest_2919 0.68 +0.3 3,112,045 - Psest_2919 0.69 -0.8 3,112,058 + Psest_2919 0.71 +0.1 3,112,058 + Psest_2919 0.71 +0.7 3,112,173 - -1.0 3,112,173 - -0.2 3,112,218 + -2.2 3,112,219 - -0.5 3,112,392 + Psest_2920 0.79 +2.3 3,112,579 - +1.8 3,112,579 - -0.5
Or see this region's nucleotide sequence