Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2566
Experiment: 2-Furfuraldehyde 0.05 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 2-Furfuraldehyde 0.05 vol% |
---|---|---|---|---|---|
remove | |||||
2,747,637 | + | +1.2 | |||
2,747,637 | + | +0.0 | |||
2,747,637 | + | -0.3 | |||
2,747,637 | + | +0.5 | |||
2,747,637 | + | -0.8 | |||
2,747,637 | + | +1.0 | |||
2,747,638 | - | -1.4 | |||
2,747,638 | - | +0.3 | |||
2,747,638 | - | -3.4 | |||
2,747,638 | - | +0.6 | |||
2,747,638 | - | -0.4 | |||
2,747,638 | - | +1.2 | |||
2,747,638 | - | -0.2 | |||
2,747,638 | - | -1.3 | |||
2,748,071 | + | Psest_2565 | 0.57 | -1.4 | |
2,748,166 | - | Psest_2565 | 0.68 | +2.2 | |
2,748,166 | - | Psest_2565 | 0.68 | +0.7 | |
2,748,330 | - | Psest_2565 | 0.86 | +1.2 | |
2,748,376 | + | -0.7 | |||
2,749,012 | - | Psest_2566 | 0.87 | +1.6 | |
2,749,176 | - | +1.3 | |||
2,749,201 | + | +0.4 | |||
2,749,355 | + | +0.6 | |||
2,749,355 | + | +1.2 | |||
2,749,355 | + | -0.8 | |||
2,749,356 | - | -1.2 | |||
2,749,356 | - | +1.4 | |||
2,749,356 | - | +0.6 | |||
2,749,364 | + | +0.5 | |||
2,749,365 | - | -0.6 | |||
2,749,365 | - | +0.3 | |||
2,749,365 | - | -0.9 | |||
2,749,365 | - | -0.8 | |||
2,749,839 | + | Psest_2567 | 0.48 | -0.9 | |
2,749,840 | - | Psest_2567 | 0.49 | +0.2 | |
2,749,882 | + | Psest_2567 | 0.54 | -0.5 | |
2,749,883 | - | Psest_2567 | 0.54 | -0.5 | |
2,749,983 | + | Psest_2567 | 0.66 | +1.8 | |
2,749,984 | - | Psest_2567 | 0.66 | -0.5 | |
2,749,984 | - | Psest_2567 | 0.66 | -0.8 | |
2,749,984 | - | Psest_2567 | 0.66 | -0.7 |
Or see this region's nucleotide sequence