Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2566

Experiment: 2-Furfuraldehyde 0.05 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2565 and Psest_2566 are separated by 136 nucleotidesPsest_2566 and Psest_2567 are separated by 358 nucleotides Psest_2565: Psest_2565 - Transcriptional regulator, at 2,747,551 to 2,748,459 _2565 Psest_2566: Psest_2566 - Uncharacterized protein conserved in bacteria, at 2,748,596 to 2,749,075 _2566 Psest_2567: Psest_2567 - PEP phosphonomutase and related enzymes, at 2,749,434 to 2,750,270 _2567 Position (kb) 2748 2749 2750Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2747.637 kb on + strandat 2747.637 kb on + strandat 2747.637 kb on + strandat 2747.637 kb on + strandat 2747.637 kb on + strandat 2747.637 kb on + strandat 2747.638 kb on - strandat 2747.638 kb on - strandat 2747.638 kb on - strandat 2747.638 kb on - strandat 2747.638 kb on - strandat 2747.638 kb on - strandat 2747.638 kb on - strandat 2747.638 kb on - strandat 2748.071 kb on + strand, within Psest_2565at 2748.166 kb on - strand, within Psest_2565at 2748.166 kb on - strand, within Psest_2565at 2748.330 kb on - strand, within Psest_2565at 2748.376 kb on + strandat 2749.012 kb on - strand, within Psest_2566at 2749.176 kb on - strandat 2749.201 kb on + strandat 2749.355 kb on + strandat 2749.355 kb on + strandat 2749.355 kb on + strandat 2749.356 kb on - strandat 2749.356 kb on - strandat 2749.356 kb on - strandat 2749.364 kb on + strandat 2749.365 kb on - strandat 2749.365 kb on - strandat 2749.365 kb on - strandat 2749.365 kb on - strandat 2749.839 kb on + strand, within Psest_2567at 2749.840 kb on - strand, within Psest_2567at 2749.882 kb on + strand, within Psest_2567at 2749.883 kb on - strand, within Psest_2567at 2749.983 kb on + strand, within Psest_2567at 2749.984 kb on - strand, within Psest_2567at 2749.984 kb on - strand, within Psest_2567at 2749.984 kb on - strand, within Psest_2567

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.05 vol%
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2,747,637 + +1.2
2,747,637 + +0.0
2,747,637 + -0.3
2,747,637 + +0.5
2,747,637 + -0.8
2,747,637 + +1.0
2,747,638 - -1.4
2,747,638 - +0.3
2,747,638 - -3.4
2,747,638 - +0.6
2,747,638 - -0.4
2,747,638 - +1.2
2,747,638 - -0.2
2,747,638 - -1.3
2,748,071 + Psest_2565 0.57 -1.4
2,748,166 - Psest_2565 0.68 +2.2
2,748,166 - Psest_2565 0.68 +0.7
2,748,330 - Psest_2565 0.86 +1.2
2,748,376 + -0.7
2,749,012 - Psest_2566 0.87 +1.6
2,749,176 - +1.3
2,749,201 + +0.4
2,749,355 + +0.6
2,749,355 + +1.2
2,749,355 + -0.8
2,749,356 - -1.2
2,749,356 - +1.4
2,749,356 - +0.6
2,749,364 + +0.5
2,749,365 - -0.6
2,749,365 - +0.3
2,749,365 - -0.9
2,749,365 - -0.8
2,749,839 + Psest_2567 0.48 -0.9
2,749,840 - Psest_2567 0.49 +0.2
2,749,882 + Psest_2567 0.54 -0.5
2,749,883 - Psest_2567 0.54 -0.5
2,749,983 + Psest_2567 0.66 +1.8
2,749,984 - Psest_2567 0.66 -0.5
2,749,984 - Psest_2567 0.66 -0.8
2,749,984 - Psest_2567 0.66 -0.7

Or see this region's nucleotide sequence