Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2460

Experiment: 2-Furfuraldehyde 0.05 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2459 and Psest_2460 are separated by 60 nucleotidesPsest_2460 and Psest_2461 are separated by 30 nucleotides Psest_2459: Psest_2459 - ATPase, P-type (transporting), HAD superfamily, subfamily IC, at 2,628,727 to 2,631,417 _2459 Psest_2460: Psest_2460 - hypothetical protein, at 2,631,478 to 2,631,756 _2460 Psest_2461: Psest_2461 - tRNA 2-selenouridine synthase, at 2,631,787 to 2,632,893 _2461 Position (kb) 2631 2632Strain fitness (log2 ratio) -2 -1 0 1 2at 2630.786 kb on - strand, within Psest_2459at 2630.786 kb on - strand, within Psest_2459at 2631.240 kb on - strandat 2631.240 kb on - strandat 2631.479 kb on + strandat 2631.506 kb on + strand, within Psest_2460at 2631.603 kb on - strand, within Psest_2460at 2631.789 kb on - strandat 2631.789 kb on - strandat 2631.822 kb on - strandat 2631.890 kb on + strandat 2631.891 kb on - strandat 2631.891 kb on - strandat 2631.891 kb on - strandat 2631.891 kb on - strandat 2631.891 kb on - strandat 2631.891 kb on - strandat 2631.891 kb on - strandat 2631.891 kb on - strandat 2631.891 kb on - strandat 2631.891 kb on - strandat 2631.891 kb on - strandat 2631.891 kb on - strandat 2631.891 kb on - strandat 2631.902 kb on + strand, within Psest_2461at 2631.989 kb on - strand, within Psest_2461at 2632.128 kb on - strand, within Psest_2461at 2632.408 kb on + strand, within Psest_2461at 2632.409 kb on - strand, within Psest_2461at 2632.524 kb on - strand, within Psest_2461at 2632.613 kb on + strand, within Psest_2461at 2632.613 kb on + strand, within Psest_2461at 2632.614 kb on - strand, within Psest_2461at 2632.619 kb on + strand, within Psest_2461at 2632.619 kb on + strand, within Psest_2461at 2632.620 kb on - strand, within Psest_2461at 2632.620 kb on - strand, within Psest_2461at 2632.736 kb on + strand, within Psest_2461at 2632.736 kb on + strand, within Psest_2461at 2632.736 kb on + strand, within Psest_2461at 2632.736 kb on + strand, within Psest_2461at 2632.737 kb on - strand, within Psest_2461at 2632.737 kb on - strand, within Psest_2461

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.05 vol%
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2,630,786 - Psest_2459 0.77 -0.7
2,630,786 - Psest_2459 0.77 +0.8
2,631,240 - +0.4
2,631,240 - -2.0
2,631,479 + +1.2
2,631,506 + Psest_2460 0.10 +2.2
2,631,603 - Psest_2460 0.45 -0.1
2,631,789 - +1.6
2,631,789 - -2.6
2,631,822 - -2.7
2,631,890 + +1.4
2,631,891 - -2.1
2,631,891 - +1.6
2,631,891 - +0.4
2,631,891 - -0.9
2,631,891 - -1.2
2,631,891 - -0.3
2,631,891 - +1.4
2,631,891 - -1.8
2,631,891 - +1.2
2,631,891 - +0.2
2,631,891 - -0.8
2,631,891 - -0.2
2,631,891 - -2.6
2,631,902 + Psest_2461 0.10 +0.7
2,631,989 - Psest_2461 0.18 +0.0
2,632,128 - Psest_2461 0.31 +0.7
2,632,408 + Psest_2461 0.56 -0.6
2,632,409 - Psest_2461 0.56 +0.1
2,632,524 - Psest_2461 0.67 +0.8
2,632,613 + Psest_2461 0.75 +1.5
2,632,613 + Psest_2461 0.75 +0.6
2,632,614 - Psest_2461 0.75 -2.4
2,632,619 + Psest_2461 0.75 -1.0
2,632,619 + Psest_2461 0.75 +0.7
2,632,620 - Psest_2461 0.75 +0.4
2,632,620 - Psest_2461 0.75 -1.3
2,632,736 + Psest_2461 0.86 +0.6
2,632,736 + Psest_2461 0.86 -0.1
2,632,736 + Psest_2461 0.86 +0.6
2,632,736 + Psest_2461 0.86 -0.3
2,632,737 - Psest_2461 0.86 -0.3
2,632,737 - Psest_2461 0.86 +0.3

Or see this region's nucleotide sequence