Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2369

Experiment: 2-Furfuraldehyde 0.05 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2368 and Psest_2369 are separated by 64 nucleotidesPsest_2369 and Psest_2370 overlap by 12 nucleotidesPsest_2370 and Psest_2371 are separated by 336 nucleotidesPsest_2371 and Psest_2372 are separated by 128 nucleotides Psest_2368: Psest_2368 - ABC transporter periplasmic binding protein, urea carboxylase region, at 2,522,192 to 2,523,256 _2368 Psest_2369: Psest_2369 - Transcriptional regulator, at 2,523,321 to 2,523,941 _2369 Psest_2370: Psest_2370 - Protein of unknown function (DUF1652)., at 2,523,930 to 2,524,202 _2370 Psest_2371: Psest_2371 - tRNA_Ser_TGA, at 2,524,539 to 2,524,628 _2371 Psest_2372: Psest_2372 - Integral membrane protein, interacts with FtsH, at 2,524,757 to 2,525,425 _2372 Position (kb) 2523 2524Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 2522.327 kb on + strand, within Psest_2368at 2522.327 kb on + strand, within Psest_2368at 2522.327 kb on + strand, within Psest_2368at 2522.328 kb on - strand, within Psest_2368at 2522.328 kb on - strand, within Psest_2368at 2522.328 kb on - strand, within Psest_2368at 2522.328 kb on - strand, within Psest_2368at 2522.369 kb on + strand, within Psest_2368at 2522.370 kb on - strand, within Psest_2368at 2522.370 kb on - strand, within Psest_2368at 2522.405 kb on + strand, within Psest_2368at 2522.406 kb on - strand, within Psest_2368at 2522.406 kb on - strand, within Psest_2368at 2522.406 kb on - strand, within Psest_2368at 2522.627 kb on + strand, within Psest_2368at 2522.627 kb on + strand, within Psest_2368at 2522.627 kb on + strand, within Psest_2368at 2522.627 kb on + strand, within Psest_2368at 2522.628 kb on - strand, within Psest_2368at 2522.628 kb on - strand, within Psest_2368at 2522.628 kb on - strand, within Psest_2368at 2522.628 kb on - strand, within Psest_2368at 2522.628 kb on - strand, within Psest_2368at 2522.764 kb on - strand, within Psest_2368at 2522.764 kb on - strand, within Psest_2368at 2522.764 kb on - strand, within Psest_2368at 2522.907 kb on - strand, within Psest_2368at 2523.000 kb on - strand, within Psest_2368at 2523.025 kb on + strand, within Psest_2368at 2523.025 kb on + strand, within Psest_2368at 2523.025 kb on + strand, within Psest_2368at 2523.025 kb on + strand, within Psest_2368at 2523.025 kb on + strand, within Psest_2368at 2523.025 kb on + strand, within Psest_2368at 2523.025 kb on + strand, within Psest_2368at 2523.025 kb on + strand, within Psest_2368at 2523.025 kb on + strand, within Psest_2368at 2523.025 kb on + strand, within Psest_2368at 2523.025 kb on + strand, within Psest_2368at 2523.025 kb on + strand, within Psest_2368at 2523.025 kb on + strand, within Psest_2368at 2523.025 kb on + strand, within Psest_2368at 2523.025 kb on + strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.032 kb on + strand, within Psest_2368at 2523.032 kb on + strand, within Psest_2368at 2523.033 kb on - strand, within Psest_2368at 2523.097 kb on - strand, within Psest_2368at 2523.224 kb on + strandat 2523.224 kb on + strandat 2523.225 kb on - strandat 2523.225 kb on - strandat 2523.225 kb on - strandat 2523.225 kb on - strandat 2523.225 kb on - strandat 2523.225 kb on - strandat 2523.225 kb on - strandat 2523.225 kb on - strandat 2523.403 kb on - strand, within Psest_2369at 2523.462 kb on + strand, within Psest_2369at 2523.462 kb on + strand, within Psest_2369at 2523.492 kb on + strand, within Psest_2369at 2523.493 kb on - strand, within Psest_2369at 2523.802 kb on - strand, within Psest_2369at 2523.802 kb on - strand, within Psest_2369at 2523.802 kb on - strand, within Psest_2369at 2523.802 kb on - strand, within Psest_2369at 2524.042 kb on - strand, within Psest_2370at 2524.153 kb on + strand, within Psest_2370at 2524.154 kb on - strand, within Psest_2370at 2524.154 kb on - strand, within Psest_2370at 2524.156 kb on + strand, within Psest_2370at 2524.157 kb on - strand, within Psest_2370at 2524.237 kb on - strandat 2524.237 kb on - strandat 2524.290 kb on + strandat 2524.472 kb on + strandat 2524.663 kb on - strandat 2524.663 kb on - strandat 2524.663 kb on - strandat 2524.663 kb on - strandat 2524.663 kb on - strandat 2524.663 kb on - strandat 2524.663 kb on - strandat 2524.663 kb on - strandat 2524.663 kb on - strandat 2524.684 kb on - strandat 2524.706 kb on - strandat 2524.833 kb on - strand, within Psest_2372at 2524.833 kb on - strand, within Psest_2372at 2524.937 kb on + strand, within Psest_2372at 2524.938 kb on - strand, within Psest_2372

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.05 vol%
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2,522,327 + Psest_2368 0.13 +2.0
2,522,327 + Psest_2368 0.13 -0.3
2,522,327 + Psest_2368 0.13 -0.1
2,522,328 - Psest_2368 0.13 -2.0
2,522,328 - Psest_2368 0.13 +1.0
2,522,328 - Psest_2368 0.13 +0.8
2,522,328 - Psest_2368 0.13 -0.4
2,522,369 + Psest_2368 0.17 +1.5
2,522,370 - Psest_2368 0.17 -1.3
2,522,370 - Psest_2368 0.17 +0.1
2,522,405 + Psest_2368 0.20 +0.6
2,522,406 - Psest_2368 0.20 +0.9
2,522,406 - Psest_2368 0.20 -0.9
2,522,406 - Psest_2368 0.20 -1.3
2,522,627 + Psest_2368 0.41 +0.8
2,522,627 + Psest_2368 0.41 +1.0
2,522,627 + Psest_2368 0.41 -0.0
2,522,627 + Psest_2368 0.41 -1.0
2,522,628 - Psest_2368 0.41 -0.6
2,522,628 - Psest_2368 0.41 -0.7
2,522,628 - Psest_2368 0.41 -1.2
2,522,628 - Psest_2368 0.41 +0.6
2,522,628 - Psest_2368 0.41 +1.3
2,522,764 - Psest_2368 0.54 -0.1
2,522,764 - Psest_2368 0.54 +0.6
2,522,764 - Psest_2368 0.54 -0.9
2,522,907 - Psest_2368 0.67 +0.0
2,523,000 - Psest_2368 0.76 +0.7
2,523,025 + Psest_2368 0.78 +0.4
2,523,025 + Psest_2368 0.78 +0.2
2,523,025 + Psest_2368 0.78 +0.2
2,523,025 + Psest_2368 0.78 -1.8
2,523,025 + Psest_2368 0.78 -2.5
2,523,025 + Psest_2368 0.78 +2.1
2,523,025 + Psest_2368 0.78 -0.1
2,523,025 + Psest_2368 0.78 -0.2
2,523,025 + Psest_2368 0.78 -1.5
2,523,025 + Psest_2368 0.78 +0.8
2,523,025 + Psest_2368 0.78 +1.7
2,523,025 + Psest_2368 0.78 +0.2
2,523,025 + Psest_2368 0.78 -0.2
2,523,025 + Psest_2368 0.78 +0.8
2,523,025 + Psest_2368 0.78 -1.0
2,523,026 - Psest_2368 0.78 +1.5
2,523,026 - Psest_2368 0.78 +0.6
2,523,026 - Psest_2368 0.78 +0.2
2,523,026 - Psest_2368 0.78 +2.3
2,523,026 - Psest_2368 0.78 +0.8
2,523,026 - Psest_2368 0.78 +1.2
2,523,026 - Psest_2368 0.78 -0.5
2,523,026 - Psest_2368 0.78 +1.6
2,523,026 - Psest_2368 0.78 -0.9
2,523,026 - Psest_2368 0.78 -0.5
2,523,026 - Psest_2368 0.78 +1.7
2,523,026 - Psest_2368 0.78 -0.5
2,523,026 - Psest_2368 0.78 -0.2
2,523,026 - Psest_2368 0.78 -0.0
2,523,026 - Psest_2368 0.78 -1.0
2,523,026 - Psest_2368 0.78 -0.2
2,523,026 - Psest_2368 0.78 -0.7
2,523,026 - Psest_2368 0.78 +0.9
2,523,026 - Psest_2368 0.78 +2.4
2,523,026 - Psest_2368 0.78 -0.3
2,523,026 - Psest_2368 0.78 +1.0
2,523,032 + Psest_2368 0.79 -0.4
2,523,032 + Psest_2368 0.79 +0.7
2,523,033 - Psest_2368 0.79 -0.3
2,523,097 - Psest_2368 0.85 -0.1
2,523,224 + -0.3
2,523,224 + -1.1
2,523,225 - +1.6
2,523,225 - -2.0
2,523,225 - -1.3
2,523,225 - +0.6
2,523,225 - +1.4
2,523,225 - -3.2
2,523,225 - -1.1
2,523,225 - -0.9
2,523,403 - Psest_2369 0.13 +0.8
2,523,462 + Psest_2369 0.23 +1.2
2,523,462 + Psest_2369 0.23 -1.3
2,523,492 + Psest_2369 0.28 -0.8
2,523,493 - Psest_2369 0.28 +1.8
2,523,802 - Psest_2369 0.77 +1.3
2,523,802 - Psest_2369 0.77 +3.3
2,523,802 - Psest_2369 0.77 -0.9
2,523,802 - Psest_2369 0.77 -1.4
2,524,042 - Psest_2370 0.41 -0.8
2,524,153 + Psest_2370 0.82 +1.4
2,524,154 - Psest_2370 0.82 -0.0
2,524,154 - Psest_2370 0.82 +1.2
2,524,156 + Psest_2370 0.83 -0.9
2,524,157 - Psest_2370 0.83 -1.3
2,524,237 - -0.3
2,524,237 - -1.0
2,524,290 + -0.5
2,524,472 + -0.0
2,524,663 - -1.9
2,524,663 - -1.5
2,524,663 - +5.5
2,524,663 - +0.9
2,524,663 - +2.0
2,524,663 - +2.3
2,524,663 - -1.4
2,524,663 - +0.3
2,524,663 - +0.2
2,524,684 - -2.9
2,524,706 - +1.2
2,524,833 - Psest_2372 0.11 -1.4
2,524,833 - Psest_2372 0.11 -1.3
2,524,937 + Psest_2372 0.27 -0.1
2,524,938 - Psest_2372 0.27 -1.2

Or see this region's nucleotide sequence