Experiment: 2-Furfuraldehyde 0.05 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2346 and Psest_2347 overlap by 4 nucleotides Psest_2347 and Psest_2348 are separated by 1 nucleotides Psest_2348 and Psest_2349 are separated by 11 nucleotides Psest_2349 and Psest_2351 are separated by 158 nucleotides
Psest_2346: Psest_2346 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component, at 2,500,071 to 2,500,961
_2346
Psest_2347: Psest_2347 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 2,500,958 to 2,501,845
_2347
Psest_2348: Psest_2348 - urea carboxylase-associated protein 2, at 2,501,847 to 2,502,575
_2348
Psest_2349: Psest_2349 - urea carboxylase-associated protein 1, at 2,502,587 to 2,503,222
_2349
Psest_2351: Psest_2351 - urea carboxylase, at 2,503,381 to 2,506,980
_2351
Position (kb)
2501
2502
2503 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2500.863 kb on + strand, within Psest_2346 at 2500.863 kb on + strand, within Psest_2346 at 2501.299 kb on - strand, within Psest_2347 at 2501.457 kb on - strand, within Psest_2347 at 2501.744 kb on + strand, within Psest_2347 at 2501.744 kb on + strand, within Psest_2347 at 2501.744 kb on + strand, within Psest_2347 at 2501.745 kb on - strand, within Psest_2347 at 2501.745 kb on - strand, within Psest_2347 at 2501.745 kb on - strand, within Psest_2347 at 2501.745 kb on - strand, within Psest_2347 at 2501.745 kb on - strand, within Psest_2347 at 2501.832 kb on - strand at 2502.162 kb on - strand, within Psest_2348 at 2502.180 kb on + strand, within Psest_2348 at 2502.372 kb on + strand, within Psest_2348 at 2502.384 kb on + strand, within Psest_2348 at 2502.450 kb on + strand, within Psest_2348 at 2502.568 kb on - strand at 2502.568 kb on - strand at 2502.568 kb on - strand at 2502.803 kb on + strand, within Psest_2349 at 2502.803 kb on + strand, within Psest_2349 at 2502.828 kb on - strand, within Psest_2349 at 2502.948 kb on - strand, within Psest_2349 at 2502.948 kb on - strand, within Psest_2349 at 2503.106 kb on + strand, within Psest_2349 at 2503.106 kb on + strand, within Psest_2349 at 2503.106 kb on + strand, within Psest_2349 at 2503.106 kb on + strand, within Psest_2349 at 2503.106 kb on + strand, within Psest_2349 at 2503.106 kb on + strand, within Psest_2349 at 2503.106 kb on + strand, within Psest_2349 at 2503.107 kb on - strand, within Psest_2349 at 2503.164 kb on + strand at 2503.165 kb on - strand at 2503.340 kb on - strand at 2503.558 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.05 vol% remove 2,500,863 + Psest_2346 0.89 -1.4 2,500,863 + Psest_2346 0.89 +1.5 2,501,299 - Psest_2347 0.38 -1.3 2,501,457 - Psest_2347 0.56 -0.7 2,501,744 + Psest_2347 0.89 -1.6 2,501,744 + Psest_2347 0.89 +1.2 2,501,744 + Psest_2347 0.89 -1.1 2,501,745 - Psest_2347 0.89 +1.3 2,501,745 - Psest_2347 0.89 -1.8 2,501,745 - Psest_2347 0.89 +1.6 2,501,745 - Psest_2347 0.89 -1.1 2,501,745 - Psest_2347 0.89 +0.3 2,501,832 - -0.5 2,502,162 - Psest_2348 0.43 +1.3 2,502,180 + Psest_2348 0.46 +0.7 2,502,372 + Psest_2348 0.72 +0.9 2,502,384 + Psest_2348 0.74 +0.6 2,502,450 + Psest_2348 0.83 +1.4 2,502,568 - -0.3 2,502,568 - -1.1 2,502,568 - -1.7 2,502,803 + Psest_2349 0.34 -1.3 2,502,803 + Psest_2349 0.34 +0.8 2,502,828 - Psest_2349 0.38 -2.8 2,502,948 - Psest_2349 0.57 +3.2 2,502,948 - Psest_2349 0.57 -1.1 2,503,106 + Psest_2349 0.82 -2.4 2,503,106 + Psest_2349 0.82 +0.9 2,503,106 + Psest_2349 0.82 +0.2 2,503,106 + Psest_2349 0.82 -0.6 2,503,106 + Psest_2349 0.82 +0.1 2,503,106 + Psest_2349 0.82 +0.4 2,503,106 + Psest_2349 0.82 -0.8 2,503,107 - Psest_2349 0.82 -0.1 2,503,164 + -2.8 2,503,165 - +2.0 2,503,340 - +0.1 2,503,558 + -1.9
Or see this region's nucleotide sequence