Experiment: 2-Furfuraldehyde 0.05 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2270 and Psest_2271 overlap by 29 nucleotides Psest_2271 and Psest_2272 are separated by 93 nucleotides Psest_2272 and Psest_2273 are separated by 86 nucleotides
Psest_2270: Psest_2270 - coenzyme PQQ biosynthesis protein E, at 2,420,309 to 2,421,463
_2270
Psest_2271: Psest_2271 - coenzyme PQQ biosynthesis protein PqqD, at 2,421,435 to 2,421,713
_2271
Psest_2272: Psest_2272 - coenzyme PQQ biosynthesis protein C, at 2,421,807 to 2,422,559
_2272
Psest_2273: Psest_2273 - coenzyme PQQ biosynthesis protein B, at 2,422,646 to 2,423,557
_2273
Position (kb)
2421
2422 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2420.548 kb on - strand, within Psest_2270 at 2420.610 kb on - strand, within Psest_2270 at 2420.730 kb on + strand, within Psest_2270 at 2420.733 kb on + strand, within Psest_2270 at 2420.819 kb on + strand, within Psest_2270 at 2420.819 kb on + strand, within Psest_2270 at 2420.820 kb on - strand, within Psest_2270 at 2420.874 kb on + strand, within Psest_2270 at 2420.887 kb on + strand, within Psest_2270 at 2421.104 kb on - strand, within Psest_2270 at 2421.180 kb on + strand, within Psest_2270 at 2421.180 kb on + strand, within Psest_2270 at 2421.180 kb on + strand, within Psest_2270 at 2421.181 kb on - strand, within Psest_2270 at 2421.215 kb on + strand, within Psest_2270 at 2421.215 kb on + strand, within Psest_2270 at 2421.294 kb on - strand, within Psest_2270 at 2421.384 kb on + strand at 2421.384 kb on + strand at 2421.385 kb on - strand at 2421.385 kb on - strand at 2421.385 kb on - strand at 2421.630 kb on + strand, within Psest_2271 at 2421.631 kb on - strand, within Psest_2271 at 2421.631 kb on - strand, within Psest_2271 at 2421.631 kb on - strand, within Psest_2271 at 2421.631 kb on - strand, within Psest_2271 at 2421.631 kb on - strand, within Psest_2271 at 2421.731 kb on + strand at 2421.731 kb on + strand at 2421.809 kb on - strand at 2421.857 kb on - strand at 2421.877 kb on + strand at 2421.877 kb on + strand at 2421.877 kb on + strand at 2421.944 kb on + strand, within Psest_2272 at 2421.944 kb on + strand, within Psest_2272 at 2421.944 kb on + strand, within Psest_2272 at 2421.944 kb on + strand, within Psest_2272 at 2421.944 kb on + strand, within Psest_2272 at 2421.944 kb on + strand, within Psest_2272 at 2421.945 kb on - strand, within Psest_2272 at 2421.945 kb on - strand, within Psest_2272 at 2421.945 kb on - strand, within Psest_2272 at 2422.039 kb on + strand, within Psest_2272 at 2422.086 kb on - strand, within Psest_2272 at 2422.180 kb on + strand, within Psest_2272 at 2422.180 kb on + strand, within Psest_2272 at 2422.181 kb on - strand, within Psest_2272 at 2422.181 kb on - strand, within Psest_2272 at 2422.181 kb on - strand, within Psest_2272 at 2422.181 kb on - strand, within Psest_2272 at 2422.395 kb on - strand, within Psest_2272 at 2422.409 kb on - strand, within Psest_2272 at 2422.409 kb on - strand, within Psest_2272 at 2422.409 kb on - strand, within Psest_2272 at 2422.462 kb on + strand, within Psest_2272 at 2422.462 kb on + strand, within Psest_2272 at 2422.462 kb on + strand, within Psest_2272 at 2422.462 kb on + strand, within Psest_2272 at 2422.463 kb on - strand, within Psest_2272 at 2422.463 kb on - strand, within Psest_2272 at 2422.463 kb on - strand, within Psest_2272 at 2422.463 kb on - strand, within Psest_2272 at 2422.463 kb on - strand, within Psest_2272 at 2422.463 kb on - strand, within Psest_2272 at 2422.463 kb on - strand, within Psest_2272 at 2422.463 kb on - strand, within Psest_2272 at 2422.463 kb on - strand, within Psest_2272 at 2422.463 kb on - strand, within Psest_2272 at 2422.495 kb on + strand at 2422.495 kb on + strand at 2422.496 kb on - strand at 2422.498 kb on + strand at 2422.498 kb on + strand at 2422.498 kb on + strand at 2422.498 kb on + strand at 2422.499 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.05 vol% remove 2,420,548 - Psest_2270 0.21 +1.4 2,420,610 - Psest_2270 0.26 +0.0 2,420,730 + Psest_2270 0.36 +0.7 2,420,733 + Psest_2270 0.37 +2.0 2,420,819 + Psest_2270 0.44 -1.2 2,420,819 + Psest_2270 0.44 -3.7 2,420,820 - Psest_2270 0.44 -0.0 2,420,874 + Psest_2270 0.49 -1.6 2,420,887 + Psest_2270 0.50 -2.0 2,421,104 - Psest_2270 0.69 -0.7 2,421,180 + Psest_2270 0.75 -0.3 2,421,180 + Psest_2270 0.75 -0.9 2,421,180 + Psest_2270 0.75 +0.4 2,421,181 - Psest_2270 0.75 +1.0 2,421,215 + Psest_2270 0.78 +0.9 2,421,215 + Psest_2270 0.78 +0.8 2,421,294 - Psest_2270 0.85 +0.5 2,421,384 + +1.4 2,421,384 + -0.1 2,421,385 - +0.0 2,421,385 - -1.4 2,421,385 - +1.3 2,421,630 + Psest_2271 0.70 +2.7 2,421,631 - Psest_2271 0.70 +1.5 2,421,631 - Psest_2271 0.70 -1.9 2,421,631 - Psest_2271 0.70 +0.8 2,421,631 - Psest_2271 0.70 -1.6 2,421,631 - Psest_2271 0.70 +0.3 2,421,731 + +0.9 2,421,731 + +0.0 2,421,809 - +0.3 2,421,857 - -1.2 2,421,877 + +1.4 2,421,877 + +0.9 2,421,877 + +1.0 2,421,944 + Psest_2272 0.18 +1.9 2,421,944 + Psest_2272 0.18 -0.4 2,421,944 + Psest_2272 0.18 +1.0 2,421,944 + Psest_2272 0.18 +0.3 2,421,944 + Psest_2272 0.18 -1.3 2,421,944 + Psest_2272 0.18 +0.6 2,421,945 - Psest_2272 0.18 -0.1 2,421,945 - Psest_2272 0.18 -0.4 2,421,945 - Psest_2272 0.18 +0.8 2,422,039 + Psest_2272 0.31 +1.7 2,422,086 - Psest_2272 0.37 +1.4 2,422,180 + Psest_2272 0.50 -0.0 2,422,180 + Psest_2272 0.50 -1.6 2,422,181 - Psest_2272 0.50 +0.0 2,422,181 - Psest_2272 0.50 +0.4 2,422,181 - Psest_2272 0.50 +2.8 2,422,181 - Psest_2272 0.50 -1.8 2,422,395 - Psest_2272 0.78 +0.2 2,422,409 - Psest_2272 0.80 -1.1 2,422,409 - Psest_2272 0.80 -1.2 2,422,409 - Psest_2272 0.80 +0.7 2,422,462 + Psest_2272 0.87 -0.4 2,422,462 + Psest_2272 0.87 +1.0 2,422,462 + Psest_2272 0.87 +2.9 2,422,462 + Psest_2272 0.87 -0.0 2,422,463 - Psest_2272 0.87 +2.1 2,422,463 - Psest_2272 0.87 +0.0 2,422,463 - Psest_2272 0.87 -0.6 2,422,463 - Psest_2272 0.87 +0.1 2,422,463 - Psest_2272 0.87 -1.7 2,422,463 - Psest_2272 0.87 -1.2 2,422,463 - Psest_2272 0.87 -0.2 2,422,463 - Psest_2272 0.87 -0.7 2,422,463 - Psest_2272 0.87 -1.7 2,422,463 - Psest_2272 0.87 -0.2 2,422,495 + -0.3 2,422,495 + -0.1 2,422,496 - +0.4 2,422,498 + -1.5 2,422,498 + -0.8 2,422,498 + -3.0 2,422,498 + -0.9 2,422,499 - -0.2
Or see this region's nucleotide sequence