Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2088

Experiment: 2-Furfuraldehyde 0.05 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2086 and Psest_2087 are separated by 109 nucleotidesPsest_2087 and Psest_2088 are separated by 59 nucleotidesPsest_2088 and Psest_2089 overlap by 17 nucleotides Psest_2086: Psest_2086 - putative quinone oxidoreductase, YhdH/YhfP family, at 2,215,134 to 2,216,126 _2086 Psest_2087: Psest_2087 - hypothetical protein, at 2,216,236 to 2,216,337 _2087 Psest_2088: Psest_2088 - Uncharacterized protein conserved in bacteria, at 2,216,397 to 2,216,897 _2088 Psest_2089: Psest_2089 - Sulfite reductase, beta subunit (hemoprotein), at 2,216,881 to 2,218,539 _2089 Position (kb) 2216 2217Strain fitness (log2 ratio) -2 -1 0 1at 2215.446 kb on + strand, within Psest_2086at 2215.516 kb on + strand, within Psest_2086at 2215.517 kb on - strand, within Psest_2086at 2215.628 kb on + strand, within Psest_2086at 2215.659 kb on + strand, within Psest_2086at 2215.661 kb on + strand, within Psest_2086at 2215.661 kb on + strand, within Psest_2086at 2215.661 kb on + strand, within Psest_2086at 2215.661 kb on + strand, within Psest_2086at 2215.661 kb on + strand, within Psest_2086at 2215.661 kb on + strand, within Psest_2086at 2215.662 kb on - strand, within Psest_2086at 2215.662 kb on - strand, within Psest_2086at 2215.662 kb on - strand, within Psest_2086at 2215.675 kb on + strand, within Psest_2086at 2215.916 kb on + strand, within Psest_2086at 2215.916 kb on + strand, within Psest_2086at 2216.113 kb on + strandat 2216.113 kb on + strandat 2216.114 kb on - strandat 2216.138 kb on + strandat 2216.139 kb on - strandat 2216.139 kb on - strandat 2216.317 kb on - strand, within Psest_2087at 2216.330 kb on - strandat 2216.330 kb on - strandat 2216.449 kb on + strand, within Psest_2088at 2216.449 kb on + strand, within Psest_2088at 2216.449 kb on + strand, within Psest_2088

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.05 vol%
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2,215,446 + Psest_2086 0.31 -0.1
2,215,516 + Psest_2086 0.38 +0.5
2,215,517 - Psest_2086 0.39 +0.8
2,215,628 + Psest_2086 0.50 -2.3
2,215,659 + Psest_2086 0.53 +1.3
2,215,661 + Psest_2086 0.53 +1.3
2,215,661 + Psest_2086 0.53 -1.0
2,215,661 + Psest_2086 0.53 -0.2
2,215,661 + Psest_2086 0.53 +1.0
2,215,661 + Psest_2086 0.53 -0.1
2,215,661 + Psest_2086 0.53 -1.7
2,215,662 - Psest_2086 0.53 +1.6
2,215,662 - Psest_2086 0.53 +0.4
2,215,662 - Psest_2086 0.53 -0.8
2,215,675 + Psest_2086 0.54 -1.9
2,215,916 + Psest_2086 0.79 +0.5
2,215,916 + Psest_2086 0.79 +0.6
2,216,113 + +0.4
2,216,113 + -0.6
2,216,114 - -0.6
2,216,138 + -1.5
2,216,139 - +1.5
2,216,139 - -1.2
2,216,317 - Psest_2087 0.79 -1.0
2,216,330 - -0.7
2,216,330 - +0.1
2,216,449 + Psest_2088 0.10 +0.6
2,216,449 + Psest_2088 0.10 +0.9
2,216,449 + Psest_2088 0.10 +1.6

Or see this region's nucleotide sequence