Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2048

Experiment: 2-Furfuraldehyde 0.05 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2047 and Psest_2048 overlap by 4 nucleotidesPsest_2048 and Psest_2049 are separated by 359 nucleotides Psest_2047: Psest_2047 - Signal transduction histidine kinase, at 2,168,638 to 2,169,903 _2047 Psest_2048: Psest_2048 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 2,169,900 to 2,170,559 _2048 Psest_2049: Psest_2049 - Outer membrane receptor proteins, mostly Fe transport, at 2,170,919 to 2,173,219 _2049 Position (kb) 2169 2170 2171Strain fitness (log2 ratio) -1 0 1 2at 2169.044 kb on + strand, within Psest_2047at 2169.120 kb on - strand, within Psest_2047at 2169.353 kb on - strand, within Psest_2047at 2169.459 kb on - strand, within Psest_2047at 2169.459 kb on - strand, within Psest_2047at 2169.945 kb on + strandat 2170.198 kb on - strand, within Psest_2048at 2170.424 kb on - strand, within Psest_2048at 2170.516 kb on + strandat 2170.516 kb on + strandat 2170.714 kb on + strandat 2170.715 kb on - strandat 2170.728 kb on + strandat 2170.778 kb on - strandat 2171.228 kb on + strand, within Psest_2049at 2171.228 kb on + strand, within Psest_2049at 2171.229 kb on - strand, within Psest_2049at 2171.394 kb on - strand, within Psest_2049at 2171.405 kb on - strand, within Psest_2049

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.05 vol%
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2,169,044 + Psest_2047 0.32 +0.8
2,169,120 - Psest_2047 0.38 -0.8
2,169,353 - Psest_2047 0.56 +1.2
2,169,459 - Psest_2047 0.65 -1.2
2,169,459 - Psest_2047 0.65 -0.5
2,169,945 + -0.7
2,170,198 - Psest_2048 0.45 +0.6
2,170,424 - Psest_2048 0.79 +1.4
2,170,516 + -0.2
2,170,516 + +0.6
2,170,714 + -0.9
2,170,715 - -0.8
2,170,728 + +1.8
2,170,778 - -1.7
2,171,228 + Psest_2049 0.13 -0.2
2,171,228 + Psest_2049 0.13 +1.3
2,171,229 - Psest_2049 0.13 +1.9
2,171,394 - Psest_2049 0.21 -0.8
2,171,405 - Psest_2049 0.21 +0.1

Or see this region's nucleotide sequence