Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2044

Experiment: 2-Furfuraldehyde 0.05 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2042 and Psest_2043 are separated by 18 nucleotidesPsest_2043 and Psest_2044 overlap by 4 nucleotidesPsest_2044 and Psest_2045 are separated by 138 nucleotides Psest_2042: Psest_2042 - PQQ-dependent catabolism-associated beta-propeller protein, at 2,162,790 to 2,163,761 _2042 Psest_2043: Psest_2043 - Sel1 repeat., at 2,163,780 to 2,164,277 _2043 Psest_2044: Psest_2044 - ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system, at 2,164,274 to 2,165,461 _2044 Psest_2045: Psest_2045 - Methyl-accepting chemotaxis protein, at 2,165,600 to 2,167,774 _2045 Position (kb) 2164 2165 2166Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2163.430 kb on + strand, within Psest_2042at 2163.430 kb on + strand, within Psest_2042at 2163.430 kb on + strand, within Psest_2042at 2163.430 kb on + strand, within Psest_2042at 2163.430 kb on + strand, within Psest_2042at 2163.430 kb on + strand, within Psest_2042at 2163.430 kb on + strand, within Psest_2042at 2163.430 kb on + strand, within Psest_2042at 2163.430 kb on + strand, within Psest_2042at 2163.431 kb on - strand, within Psest_2042at 2163.431 kb on - strand, within Psest_2042at 2163.431 kb on - strand, within Psest_2042at 2163.431 kb on - strand, within Psest_2042at 2163.431 kb on - strand, within Psest_2042at 2163.556 kb on + strand, within Psest_2042at 2163.556 kb on + strand, within Psest_2042at 2163.556 kb on + strand, within Psest_2042at 2163.556 kb on + strand, within Psest_2042at 2163.556 kb on + strand, within Psest_2042at 2163.556 kb on + strand, within Psest_2042at 2163.557 kb on - strand, within Psest_2042at 2163.557 kb on - strand, within Psest_2042at 2163.557 kb on - strand, within Psest_2042at 2163.682 kb on + strandat 2163.683 kb on - strandat 2163.683 kb on - strandat 2163.683 kb on - strandat 2163.683 kb on - strandat 2163.683 kb on - strandat 2163.829 kb on + strandat 2163.958 kb on + strand, within Psest_2043at 2163.958 kb on + strand, within Psest_2043at 2163.959 kb on - strand, within Psest_2043at 2163.959 kb on - strand, within Psest_2043at 2164.045 kb on + strand, within Psest_2043at 2164.045 kb on + strand, within Psest_2043at 2164.045 kb on + strand, within Psest_2043at 2164.045 kb on + strand, within Psest_2043at 2164.046 kb on - strand, within Psest_2043at 2164.046 kb on - strand, within Psest_2043at 2164.072 kb on + strand, within Psest_2043at 2164.072 kb on + strand, within Psest_2043at 2164.073 kb on - strand, within Psest_2043at 2164.073 kb on - strand, within Psest_2043at 2164.150 kb on + strand, within Psest_2043at 2164.151 kb on - strand, within Psest_2043at 2164.189 kb on + strand, within Psest_2043at 2164.189 kb on + strand, within Psest_2043at 2164.189 kb on + strand, within Psest_2043at 2164.189 kb on + strand, within Psest_2043at 2164.190 kb on - strand, within Psest_2043at 2164.190 kb on - strand, within Psest_2043at 2164.190 kb on - strand, within Psest_2043at 2164.190 kb on - strand, within Psest_2043at 2164.440 kb on + strand, within Psest_2044at 2164.641 kb on + strand, within Psest_2044at 2164.719 kb on + strand, within Psest_2044at 2164.728 kb on + strand, within Psest_2044at 2164.729 kb on - strand, within Psest_2044at 2164.773 kb on + strand, within Psest_2044at 2164.774 kb on - strand, within Psest_2044at 2165.226 kb on + strand, within Psest_2044at 2165.450 kb on + strandat 2165.450 kb on + strandat 2165.450 kb on + strandat 2165.450 kb on + strandat 2165.450 kb on + strandat 2165.450 kb on + strandat 2165.450 kb on + strandat 2165.450 kb on + strandat 2165.450 kb on + strandat 2165.450 kb on + strandat 2165.450 kb on + strandat 2165.451 kb on - strandat 2165.451 kb on - strandat 2165.451 kb on - strandat 2165.451 kb on - strandat 2165.451 kb on - strandat 2165.451 kb on - strandat 2165.451 kb on - strandat 2165.451 kb on - strandat 2165.491 kb on + strandat 2165.491 kb on + strandat 2165.491 kb on + strandat 2165.492 kb on - strandat 2165.492 kb on - strandat 2165.516 kb on + strandat 2165.527 kb on + strandat 2165.714 kb on + strandat 2165.715 kb on - strandat 2165.715 kb on - strandat 2166.202 kb on - strand, within Psest_2045at 2166.202 kb on - strand, within Psest_2045at 2166.365 kb on + strand, within Psest_2045

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.05 vol%
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2,163,430 + Psest_2042 0.66 +0.2
2,163,430 + Psest_2042 0.66 +1.6
2,163,430 + Psest_2042 0.66 +1.1
2,163,430 + Psest_2042 0.66 -0.2
2,163,430 + Psest_2042 0.66 +3.0
2,163,430 + Psest_2042 0.66 -0.8
2,163,430 + Psest_2042 0.66 -1.7
2,163,430 + Psest_2042 0.66 -1.8
2,163,430 + Psest_2042 0.66 -1.5
2,163,431 - Psest_2042 0.66 -0.9
2,163,431 - Psest_2042 0.66 +0.5
2,163,431 - Psest_2042 0.66 -1.3
2,163,431 - Psest_2042 0.66 -0.9
2,163,431 - Psest_2042 0.66 -1.5
2,163,556 + Psest_2042 0.79 +0.5
2,163,556 + Psest_2042 0.79 +0.2
2,163,556 + Psest_2042 0.79 -1.3
2,163,556 + Psest_2042 0.79 -0.7
2,163,556 + Psest_2042 0.79 -0.1
2,163,556 + Psest_2042 0.79 +1.6
2,163,557 - Psest_2042 0.79 +1.4
2,163,557 - Psest_2042 0.79 -0.4
2,163,557 - Psest_2042 0.79 +1.7
2,163,682 + +0.7
2,163,683 - +0.8
2,163,683 - -0.5
2,163,683 - -0.1
2,163,683 - +0.6
2,163,683 - +1.3
2,163,829 + +1.4
2,163,958 + Psest_2043 0.36 -0.2
2,163,958 + Psest_2043 0.36 +0.8
2,163,959 - Psest_2043 0.36 +2.1
2,163,959 - Psest_2043 0.36 -0.4
2,164,045 + Psest_2043 0.53 +0.3
2,164,045 + Psest_2043 0.53 +1.1
2,164,045 + Psest_2043 0.53 +0.5
2,164,045 + Psest_2043 0.53 +0.6
2,164,046 - Psest_2043 0.53 -1.0
2,164,046 - Psest_2043 0.53 +0.6
2,164,072 + Psest_2043 0.59 -1.0
2,164,072 + Psest_2043 0.59 +2.1
2,164,073 - Psest_2043 0.59 -1.2
2,164,073 - Psest_2043 0.59 -1.7
2,164,150 + Psest_2043 0.74 +0.4
2,164,151 - Psest_2043 0.74 +0.6
2,164,189 + Psest_2043 0.82 -0.3
2,164,189 + Psest_2043 0.82 -0.3
2,164,189 + Psest_2043 0.82 +1.2
2,164,189 + Psest_2043 0.82 -0.4
2,164,190 - Psest_2043 0.82 +1.3
2,164,190 - Psest_2043 0.82 -1.2
2,164,190 - Psest_2043 0.82 -0.4
2,164,190 - Psest_2043 0.82 -0.2
2,164,440 + Psest_2044 0.14 +2.8
2,164,641 + Psest_2044 0.31 -0.4
2,164,719 + Psest_2044 0.37 +3.1
2,164,728 + Psest_2044 0.38 +0.4
2,164,729 - Psest_2044 0.38 +0.5
2,164,773 + Psest_2044 0.42 -1.6
2,164,774 - Psest_2044 0.42 +0.2
2,165,226 + Psest_2044 0.80 +1.6
2,165,450 + -0.7
2,165,450 + +1.2
2,165,450 + +0.4
2,165,450 + -0.8
2,165,450 + -0.3
2,165,450 + -1.1
2,165,450 + +0.4
2,165,450 + -1.3
2,165,450 + -1.1
2,165,450 + -0.7
2,165,450 + -0.8
2,165,451 - -1.2
2,165,451 - +0.3
2,165,451 - +0.7
2,165,451 - +1.9
2,165,451 - -0.7
2,165,451 - -0.2
2,165,451 - +0.1
2,165,451 - +1.5
2,165,491 + +1.4
2,165,491 + -0.6
2,165,491 + +0.6
2,165,492 - +0.3
2,165,492 - -0.2
2,165,516 + -1.8
2,165,527 + -0.5
2,165,714 + -0.2
2,165,715 - -0.5
2,165,715 - -2.8
2,166,202 - Psest_2045 0.28 -0.6
2,166,202 - Psest_2045 0.28 -0.6
2,166,365 + Psest_2045 0.35 -0.0

Or see this region's nucleotide sequence