Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1111

Experiment: 2-Furfuraldehyde 0.05 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1109 and Psest_1110 are separated by 0 nucleotidesPsest_1110 and Psest_1111 are separated by 3 nucleotidesPsest_1111 and Psest_1112 are separated by 197 nucleotides Psest_1109: Psest_1109 - 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, at 1,203,140 to 1,204,000 _1109 Psest_1110: Psest_1110 - outer membrane lipoprotein LolB, at 1,204,001 to 1,204,621 _1110 Psest_1111: Psest_1111 - Flp pilus assembly protein TadD, contains TPR repeats, at 1,204,625 to 1,206,352 _1111 Psest_1112: Psest_1112 - glutamyl-tRNA reductase, at 1,206,550 to 1,207,818 _1112 Position (kb) 1204 1205 1206 1207Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1204.689 kb on - strandat 1204.689 kb on - strandat 1204.770 kb on - strandat 1204.770 kb on - strandat 1204.808 kb on + strand, within Psest_1111at 1204.896 kb on + strand, within Psest_1111at 1204.896 kb on + strand, within Psest_1111at 1204.896 kb on + strand, within Psest_1111at 1205.070 kb on + strand, within Psest_1111at 1205.071 kb on - strand, within Psest_1111at 1205.071 kb on - strand, within Psest_1111at 1205.176 kb on - strand, within Psest_1111at 1205.380 kb on - strand, within Psest_1111at 1205.425 kb on - strand, within Psest_1111at 1205.575 kb on - strand, within Psest_1111at 1205.667 kb on - strand, within Psest_1111at 1206.363 kb on + strandat 1206.510 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.05 vol%
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1,204,689 - +0.5
1,204,689 - +1.3
1,204,770 - +1.9
1,204,770 - -1.6
1,204,808 + Psest_1111 0.11 +0.8
1,204,896 + Psest_1111 0.16 -1.4
1,204,896 + Psest_1111 0.16 -1.7
1,204,896 + Psest_1111 0.16 -2.5
1,205,070 + Psest_1111 0.26 +0.1
1,205,071 - Psest_1111 0.26 +2.9
1,205,071 - Psest_1111 0.26 -1.3
1,205,176 - Psest_1111 0.32 +0.1
1,205,380 - Psest_1111 0.44 +2.6
1,205,425 - Psest_1111 0.46 +1.7
1,205,575 - Psest_1111 0.55 +0.1
1,205,667 - Psest_1111 0.60 -1.0
1,206,363 + -2.4
1,206,510 + +0.5

Or see this region's nucleotide sequence