Experiment: Nalidixic 0.00390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4306 and Psest_4307 are separated by 53 nucleotides Psest_4307 and Psest_4308 are separated by 58 nucleotides Psest_4308 and Psest_4309 overlap by 4 nucleotides
Psest_4306: Psest_4306 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, at 4,505,121 to 4,506,446
_4306
Psest_4307: Psest_4307 - ABC-type Zn2+ transport system, periplasmic component/surface adhesin, at 4,506,500 to 4,507,531
_4307
Psest_4308: Psest_4308 - Fe2+/Zn2+ uptake regulation proteins, at 4,507,590 to 4,508,075
_4308
Psest_4309: Psest_4309 - ABC-type Mn/Zn transport systems, ATPase component, at 4,508,072 to 4,508,842
_4309
Position (kb)
4506
4507
4508 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4505.657 kb on + strand, within Psest_4306 at 4505.657 kb on + strand, within Psest_4306 at 4506.076 kb on - strand, within Psest_4306 at 4506.081 kb on + strand, within Psest_4306 at 4506.081 kb on + strand, within Psest_4306 at 4506.081 kb on + strand, within Psest_4306 at 4506.082 kb on - strand, within Psest_4306 at 4506.082 kb on - strand, within Psest_4306 at 4506.082 kb on - strand, within Psest_4306 at 4506.082 kb on - strand, within Psest_4306 at 4506.082 kb on - strand, within Psest_4306 at 4506.082 kb on - strand, within Psest_4306 at 4506.132 kb on + strand, within Psest_4306 at 4506.132 kb on + strand, within Psest_4306 at 4506.132 kb on + strand, within Psest_4306 at 4506.133 kb on - strand, within Psest_4306 at 4506.133 kb on - strand, within Psest_4306 at 4506.133 kb on - strand, within Psest_4306 at 4506.133 kb on - strand, within Psest_4306 at 4506.133 kb on - strand, within Psest_4306 at 4506.133 kb on - strand, within Psest_4306 at 4506.133 kb on - strand, within Psest_4306 at 4506.133 kb on - strand, within Psest_4306 at 4506.133 kb on - strand, within Psest_4306 at 4506.338 kb on - strand at 4506.428 kb on + strand at 4506.429 kb on - strand at 4506.805 kb on - strand, within Psest_4307 at 4506.805 kb on - strand, within Psest_4307 at 4507.237 kb on + strand, within Psest_4307 at 4507.238 kb on - strand, within Psest_4307 at 4507.238 kb on - strand, within Psest_4307 at 4507.297 kb on - strand, within Psest_4307 at 4507.325 kb on + strand, within Psest_4307 at 4507.326 kb on - strand, within Psest_4307 at 4507.348 kb on - strand, within Psest_4307 at 4507.512 kb on + strand at 4507.513 kb on - strand at 4507.554 kb on - strand at 4507.557 kb on + strand at 4507.557 kb on + strand at 4507.557 kb on + strand at 4507.557 kb on + strand at 4507.557 kb on + strand at 4507.557 kb on + strand at 4507.558 kb on - strand at 4507.558 kb on - strand at 4507.558 kb on - strand at 4508.082 kb on + strand at 4508.082 kb on + strand at 4508.082 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.00390625 mg/ml remove 4,505,657 + Psest_4306 0.40 +0.1 4,505,657 + Psest_4306 0.40 -1.2 4,506,076 - Psest_4306 0.72 -0.6 4,506,081 + Psest_4306 0.72 +0.0 4,506,081 + Psest_4306 0.72 -0.3 4,506,081 + Psest_4306 0.72 +0.8 4,506,082 - Psest_4306 0.72 -0.3 4,506,082 - Psest_4306 0.72 -0.9 4,506,082 - Psest_4306 0.72 -0.6 4,506,082 - Psest_4306 0.72 +2.8 4,506,082 - Psest_4306 0.72 -0.9 4,506,082 - Psest_4306 0.72 -0.6 4,506,132 + Psest_4306 0.76 -1.0 4,506,132 + Psest_4306 0.76 -1.4 4,506,132 + Psest_4306 0.76 -1.3 4,506,133 - Psest_4306 0.76 +2.2 4,506,133 - Psest_4306 0.76 -0.2 4,506,133 - Psest_4306 0.76 -0.3 4,506,133 - Psest_4306 0.76 -0.1 4,506,133 - Psest_4306 0.76 -0.1 4,506,133 - Psest_4306 0.76 -0.9 4,506,133 - Psest_4306 0.76 -1.2 4,506,133 - Psest_4306 0.76 -0.3 4,506,133 - Psest_4306 0.76 +0.5 4,506,338 - +0.6 4,506,428 + -0.2 4,506,429 - -0.8 4,506,805 - Psest_4307 0.30 -0.6 4,506,805 - Psest_4307 0.30 +0.2 4,507,237 + Psest_4307 0.71 +0.5 4,507,238 - Psest_4307 0.72 -1.5 4,507,238 - Psest_4307 0.72 +1.5 4,507,297 - Psest_4307 0.77 -2.2 4,507,325 + Psest_4307 0.80 -0.1 4,507,326 - Psest_4307 0.80 +1.2 4,507,348 - Psest_4307 0.82 -1.0 4,507,512 + +1.8 4,507,513 - -1.2 4,507,554 - -0.0 4,507,557 + -1.2 4,507,557 + -0.5 4,507,557 + -1.1 4,507,557 + -2.4 4,507,557 + +0.8 4,507,557 + -2.1 4,507,558 - +0.7 4,507,558 - -0.5 4,507,558 - -1.7 4,508,082 + -2.8 4,508,082 + +1.9 4,508,082 + -0.1
Or see this region's nucleotide sequence