Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3409

Experiment: Nalidixic 0.00390625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nalidixic 0.00390625 mg/ml
3,579,185	-		Psest_3407	0.82	-0.6
3,579,185	-		Psest_3407	0.82	-0.7
3,579,185	-		Psest_3407	0.82	-2.1
3,579,217	+		Psest_3407	0.83	+1.0
3,579,260	+		Psest_3407	0.85	+0.1
3,579,261	-		Psest_3407	0.85	-1.0
3,579,273	-		Psest_3407	0.85	-1.3
3,579,273	-		Psest_3407	0.85	+1.5
3,579,273	-		Psest_3407	0.85	+0.7
3,579,287	+		Psest_3407	0.85	+0.3
3,579,288	-		Psest_3407	0.85	-0.7
3,579,332	+		Psest_3407	0.87	-0.2
3,579,332	+		Psest_3407	0.87	-1.6
3,579,332	+		Psest_3407	0.87	-0.4
3,579,332	+		Psest_3407	0.87	+0.1
3,579,332	+		Psest_3407	0.87	-0.2
3,579,333	-		Psest_3407	0.87	-1.2
3,579,333	-		Psest_3407	0.87	-0.2
3,579,333	-		Psest_3407	0.87	+1.0
3,579,359	-		Psest_3407	0.88	-0.1
3,579,450	+				+0.7
3,579,533	+				+0.5
3,579,533	+				-1.4
3,579,533	+				-0.4
3,579,533	+				-1.8
3,579,533	+				-0.3
3,579,533	+				+1.8
3,579,533	+				-1.7
3,579,534	-				-0.5
3,579,534	-				-0.3
3,579,534	-				+2.1
3,579,534	-				-0.5
3,579,534	-				-0.6
3,579,534	-				+2.3
3,579,534	-				+0.1
3,579,534	-				-0.5
3,579,534	-				+0.2
3,579,534	-				-1.0
3,579,639	-				-1.7
3,579,690	-				+0.4
3,579,690	-				-0.0
3,579,732	+				-0.5
3,579,733	-				-2.1
3,579,773	+				-1.0
3,579,773	+				+1.0
3,579,773	+				+2.5
3,579,773	+				-1.3
3,579,773	+				-2.4
3,579,786	+				+0.1
3,579,900	+		Psest_3408	0.52	+0.1
3,579,900	+		Psest_3408	0.52	-1.0
3,579,900	+		Psest_3408	0.52	-0.8
3,579,900	+		Psest_3408	0.52	+0.7
3,579,900	+		Psest_3408	0.52	-1.3
3,579,900	+		Psest_3408	0.52	-0.6
3,579,900	+		Psest_3408	0.52	+0.8
3,579,900	+		Psest_3408	0.52	-1.2
3,579,900	+		Psest_3408	0.52	-1.5
3,579,901	-		Psest_3408	0.52	-0.6
3,579,901	-		Psest_3408	0.52	+0.5
3,580,000	+				+0.0
3,580,001	-				-0.2
3,580,001	-				+0.7
3,580,001	-				-0.4
3,580,036	+				+1.4
3,580,037	-				+0.8
3,580,147	+				+0.2
3,580,147	+				-0.2
3,580,148	-				-0.9
3,580,207	+		Psest_3409	0.16	+0.5
3,580,261	+		Psest_3409	0.26	-0.3
3,580,336	+		Psest_3409	0.38	-0.4
3,580,337	-		Psest_3409	0.38	-0.8
3,580,337	-		Psest_3409	0.38	-0.7
3,580,556	-		Psest_3409	0.76	-1.7
3,580,575	+		Psest_3409	0.79	-0.6
3,580,575	+		Psest_3409	0.79	-1.7
3,580,575	+		Psest_3409	0.79	-1.0
3,580,576	-		Psest_3409	0.79	-1.9
3,580,576	-		Psest_3409	0.79	+3.5
3,580,668	+				+0.1
3,580,730	+				-2.2
3,580,731	-				-0.7
3,580,731	-				+1.5
3,580,736	+				+1.0
3,580,736	+				-1.1
3,580,889	-		Psest_3410	0.14	-0.0
3,580,889	-		Psest_3410	0.14	+1.0
3,580,924	+		Psest_3410	0.16	-1.2
3,580,924	+		Psest_3410	0.16	+1.2
3,580,925	-		Psest_3410	0.16	+3.4
3,580,925	-		Psest_3410	0.16	+1.5
3,580,968	+		Psest_3410	0.20	+1.5
3,580,969	-		Psest_3410	0.20	+0.1
3,580,969	-		Psest_3410	0.20	+1.1
3,580,974	+		Psest_3410	0.20	-0.8
3,580,975	-		Psest_3410	0.20	-0.2
3,580,975	-		Psest_3410	0.20	+1.2
3,580,975	-		Psest_3410	0.20	+1.1
3,580,975	-		Psest_3410	0.20	-0.7
3,580,989	+		Psest_3410	0.21	+0.9
3,581,107	+		Psest_3410	0.30	+0.7
3,581,108	-		Psest_3410	0.30	-0.5
3,581,239	-		Psest_3410	0.39	-0.4
3,581,287	+		Psest_3410	0.42	+0.6
3,581,288	-		Psest_3410	0.43	-0.0
3,581,288	-		Psest_3410	0.43	-2.0
3,581,342	+		Psest_3410	0.46	+0.7
3,581,342	+		Psest_3410	0.46	-0.8
3,581,369	+		Psest_3410	0.48	-0.4
3,581,397	+		Psest_3410	0.50	+0.2
3,581,397	+		Psest_3410	0.50	-1.7
3,581,398	-		Psest_3410	0.50	-0.4
3,581,407	+		Psest_3410	0.51	+0.5
3,581,408	-		Psest_3410	0.51	-1.3
3,581,408	-		Psest_3410	0.51	-0.0
3,581,408	-		Psest_3410	0.51	-1.9
3,581,408	-		Psest_3410	0.51	+0.4
3,581,408	-		Psest_3410	0.51	+0.0
3,581,506	+		Psest_3410	0.58	-0.5
3,581,507	-		Psest_3410	0.58	+1.9
3,581,507	-		Psest_3410	0.58	+0.4
3,581,537	-		Psest_3410	0.60	+2.5
3,581,608	+		Psest_3410	0.65	+0.3
3,581,608	+		Psest_3410	0.65	+1.0
3,581,609	-		Psest_3410	0.66	-0.8
3,581,609	-		Psest_3410	0.66	+1.0
3,581,609	-		Psest_3410	0.66	-0.4
3,581,609	-		Psest_3410	0.66	-0.3
3,581,609	-		Psest_3410	0.66	-0.2
3,581,609	-		Psest_3410	0.66	-0.7
3,581,612	+		Psest_3410	0.66	+0.6
3,581,612	+		Psest_3410	0.66	+2.4
3,581,612	+		Psest_3410	0.66	-0.1
3,581,612	+		Psest_3410	0.66	+1.7
3,581,613	-		Psest_3410	0.66	-0.0
3,581,613	-		Psest_3410	0.66	+0.1
3,581,613	-		Psest_3410	0.66	+1.0
3,581,621	+		Psest_3410	0.66	+2.1