Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0321

Experiment: Nalidixic 0.00390625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0320 and Psest_0321 are separated by 12 nucleotidesPsest_0321 and Psest_0322 are separated by 55 nucleotidesPsest_0322 and Psest_0323 are separated by 222 nucleotides Psest_0320: Psest_0320 - ABC-type multidrug transport system, ATPase component, at 343,620 to 344,543 _0320 Psest_0321: Psest_0321 - Predicted membrane protein, at 344,556 to 345,317 _0321 Psest_0322: Psest_0322 - hypothetical protein, at 345,373 to 345,708 _0322 Psest_0323: Psest_0323 - S-adenosylmethionine synthetase, at 345,931 to 347,121 _0323 Position (kb) 344 345 346Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 343.579 kb on + strandat 343.580 kb on - strandat 343.583 kb on + strandat 343.659 kb on + strandat 343.659 kb on + strandat 343.660 kb on - strandat 343.660 kb on - strandat 344.196 kb on + strand, within Psest_0320at 344.196 kb on + strand, within Psest_0320at 344.197 kb on - strand, within Psest_0320at 344.197 kb on - strand, within Psest_0320at 344.197 kb on - strand, within Psest_0320at 344.197 kb on - strand, within Psest_0320at 344.197 kb on - strand, within Psest_0320at 344.197 kb on - strand, within Psest_0320at 344.197 kb on - strand, within Psest_0320at 344.565 kb on + strandat 344.583 kb on + strandat 344.583 kb on + strandat 344.583 kb on + strandat 344.584 kb on - strandat 344.584 kb on - strandat 344.584 kb on - strandat 344.584 kb on - strandat 344.658 kb on + strand, within Psest_0321at 344.658 kb on + strand, within Psest_0321at 344.659 kb on - strand, within Psest_0321at 344.659 kb on - strand, within Psest_0321at 344.659 kb on - strand, within Psest_0321at 344.668 kb on + strand, within Psest_0321at 344.796 kb on + strand, within Psest_0321at 344.796 kb on + strand, within Psest_0321at 344.796 kb on + strand, within Psest_0321at 344.796 kb on + strand, within Psest_0321at 344.796 kb on + strand, within Psest_0321at 344.796 kb on + strand, within Psest_0321at 344.796 kb on + strand, within Psest_0321at 344.796 kb on + strand, within Psest_0321at 344.796 kb on + strand, within Psest_0321at 344.796 kb on + strand, within Psest_0321at 344.796 kb on + strand, within Psest_0321at 344.796 kb on + strand, within Psest_0321at 344.796 kb on + strand, within Psest_0321at 344.796 kb on + strand, within Psest_0321at 344.796 kb on + strand, within Psest_0321at 344.796 kb on + strand, within Psest_0321at 344.796 kb on + strand, within Psest_0321at 344.796 kb on + strand, within Psest_0321at 344.796 kb on + strand, within Psest_0321at 344.797 kb on + strand, within Psest_0321at 344.797 kb on - strand, within Psest_0321at 344.797 kb on - strand, within Psest_0321at 344.797 kb on - strand, within Psest_0321at 344.797 kb on - strand, within Psest_0321at 344.797 kb on - strand, within Psest_0321at 344.797 kb on - strand, within Psest_0321at 344.797 kb on - strand, within Psest_0321at 344.797 kb on - strand, within Psest_0321at 344.797 kb on - strand, within Psest_0321at 344.797 kb on - strand, within Psest_0321at 344.797 kb on - strand, within Psest_0321at 344.797 kb on - strand, within Psest_0321at 344.797 kb on - strand, within Psest_0321at 344.797 kb on - strand, within Psest_0321at 344.797 kb on - strand, within Psest_0321at 344.823 kb on + strand, within Psest_0321at 344.823 kb on + strand, within Psest_0321at 344.823 kb on + strand, within Psest_0321at 344.823 kb on + strand, within Psest_0321at 344.823 kb on + strand, within Psest_0321at 344.823 kb on + strand, within Psest_0321at 344.824 kb on - strand, within Psest_0321at 344.824 kb on - strand, within Psest_0321at 344.850 kb on + strand, within Psest_0321at 344.850 kb on + strand, within Psest_0321at 344.851 kb on - strand, within Psest_0321at 344.851 kb on - strand, within Psest_0321at 344.851 kb on - strand, within Psest_0321at 344.851 kb on - strand, within Psest_0321at 344.946 kb on + strand, within Psest_0321at 344.946 kb on + strand, within Psest_0321at 345.111 kb on + strand, within Psest_0321at 345.111 kb on + strand, within Psest_0321at 345.111 kb on + strand, within Psest_0321at 345.111 kb on + strand, within Psest_0321at 345.111 kb on + strand, within Psest_0321at 345.112 kb on - strand, within Psest_0321at 345.112 kb on - strand, within Psest_0321at 345.112 kb on - strand, within Psest_0321at 345.171 kb on + strand, within Psest_0321at 345.171 kb on + strand, within Psest_0321at 345.172 kb on - strand, within Psest_0321at 345.172 kb on - strand, within Psest_0321at 345.172 kb on - strand, within Psest_0321at 345.172 kb on - strand, within Psest_0321at 345.172 kb on - strand, within Psest_0321at 345.201 kb on + strand, within Psest_0321at 345.201 kb on + strand, within Psest_0321at 345.201 kb on + strand, within Psest_0321at 345.201 kb on + strand, within Psest_0321at 345.201 kb on + strand, within Psest_0321at 345.202 kb on - strand, within Psest_0321at 345.202 kb on - strand, within Psest_0321at 345.358 kb on + strandat 345.358 kb on + strandat 345.359 kb on - strandat 345.359 kb on - strandat 345.374 kb on + strandat 345.374 kb on + strandat 345.374 kb on + strandat 345.374 kb on + strandat 345.374 kb on + strandat 345.374 kb on + strandat 345.374 kb on + strandat 345.375 kb on - strandat 345.375 kb on - strandat 345.702 kb on + strandat 345.702 kb on + strandat 345.702 kb on + strandat 345.702 kb on + strandat 345.702 kb on + strandat 345.702 kb on + strandat 345.703 kb on - strandat 345.703 kb on - strandat 345.703 kb on - strandat 345.703 kb on - strandat 345.703 kb on - strandat 345.703 kb on - strandat 345.723 kb on + strandat 345.723 kb on + strandat 345.723 kb on + strandat 345.724 kb on - strandat 345.724 kb on - strandat 345.724 kb on - strandat 345.724 kb on - strandat 345.724 kb on - strandat 345.724 kb on - strandat 345.724 kb on - strandat 345.778 kb on - strandat 345.778 kb on - strandat 345.778 kb on - strandat 345.778 kb on - strandat 345.778 kb on - strandat 345.832 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.00390625 mg/ml
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343,579 + -1.0
343,580 - +0.8
343,583 + -2.3
343,659 + +0.8
343,659 + +1.3
343,660 - +1.7
343,660 - +0.7
344,196 + Psest_0320 0.62 +1.5
344,196 + Psest_0320 0.62 +3.3
344,197 - Psest_0320 0.62 +4.0
344,197 - Psest_0320 0.62 -0.4
344,197 - Psest_0320 0.62 -1.0
344,197 - Psest_0320 0.62 +0.0
344,197 - Psest_0320 0.62 +0.8
344,197 - Psest_0320 0.62 +3.2
344,197 - Psest_0320 0.62 -0.4
344,565 + +2.1
344,583 + +2.1
344,583 + +2.0
344,583 + +2.3
344,584 - +1.3
344,584 - -3.1
344,584 - +1.2
344,584 - +0.6
344,658 + Psest_0321 0.13 +2.0
344,658 + Psest_0321 0.13 +1.8
344,659 - Psest_0321 0.14 +0.2
344,659 - Psest_0321 0.14 +1.1
344,659 - Psest_0321 0.14 +1.1
344,668 + Psest_0321 0.15 -0.3
344,796 + Psest_0321 0.31 -0.0
344,796 + Psest_0321 0.31 -0.5
344,796 + Psest_0321 0.31 +1.0
344,796 + Psest_0321 0.31 -0.7
344,796 + Psest_0321 0.31 +2.5
344,796 + Psest_0321 0.31 +2.0
344,796 + Psest_0321 0.31 +0.9
344,796 + Psest_0321 0.31 -1.0
344,796 + Psest_0321 0.31 +0.5
344,796 + Psest_0321 0.31 +1.9
344,796 + Psest_0321 0.31 +0.4
344,796 + Psest_0321 0.31 +1.0
344,796 + Psest_0321 0.31 +0.5
344,796 + Psest_0321 0.31 -0.2
344,796 + Psest_0321 0.31 +1.4
344,796 + Psest_0321 0.31 +0.9
344,796 + Psest_0321 0.31 -0.0
344,796 + Psest_0321 0.31 -0.4
344,796 + Psest_0321 0.31 +0.8
344,797 + Psest_0321 0.32 -1.3
344,797 - Psest_0321 0.32 -1.6
344,797 - Psest_0321 0.32 +1.0
344,797 - Psest_0321 0.32 +0.9
344,797 - Psest_0321 0.32 -0.8
344,797 - Psest_0321 0.32 +0.5
344,797 - Psest_0321 0.32 +1.8
344,797 - Psest_0321 0.32 -0.5
344,797 - Psest_0321 0.32 +4.2
344,797 - Psest_0321 0.32 -0.5
344,797 - Psest_0321 0.32 +0.0
344,797 - Psest_0321 0.32 +2.9
344,797 - Psest_0321 0.32 +0.0
344,797 - Psest_0321 0.32 +3.0
344,797 - Psest_0321 0.32 +0.3
344,797 - Psest_0321 0.32 +1.1
344,823 + Psest_0321 0.35 +2.4
344,823 + Psest_0321 0.35 -0.8
344,823 + Psest_0321 0.35 +2.1
344,823 + Psest_0321 0.35 +2.6
344,823 + Psest_0321 0.35 +3.8
344,823 + Psest_0321 0.35 +2.3
344,824 - Psest_0321 0.35 +2.1
344,824 - Psest_0321 0.35 +1.4
344,850 + Psest_0321 0.39 +0.1
344,850 + Psest_0321 0.39 +3.0
344,851 - Psest_0321 0.39 -0.1
344,851 - Psest_0321 0.39 +0.8
344,851 - Psest_0321 0.39 +3.3
344,851 - Psest_0321 0.39 +1.5
344,946 + Psest_0321 0.51 +0.7
344,946 + Psest_0321 0.51 -1.0
345,111 + Psest_0321 0.73 +3.3
345,111 + Psest_0321 0.73 +1.9
345,111 + Psest_0321 0.73 +2.6
345,111 + Psest_0321 0.73 +0.7
345,111 + Psest_0321 0.73 -1.1
345,112 - Psest_0321 0.73 +0.1
345,112 - Psest_0321 0.73 +1.8
345,112 - Psest_0321 0.73 -1.0
345,171 + Psest_0321 0.81 -0.1
345,171 + Psest_0321 0.81 -1.8
345,172 - Psest_0321 0.81 +0.3
345,172 - Psest_0321 0.81 +1.0
345,172 - Psest_0321 0.81 -0.5
345,172 - Psest_0321 0.81 +1.0
345,172 - Psest_0321 0.81 +0.6
345,201 + Psest_0321 0.85 -1.0
345,201 + Psest_0321 0.85 +1.4
345,201 + Psest_0321 0.85 +1.2
345,201 + Psest_0321 0.85 +0.9
345,201 + Psest_0321 0.85 +0.2
345,202 - Psest_0321 0.85 +2.6
345,202 - Psest_0321 0.85 -0.1
345,358 + +1.0
345,358 + +0.1
345,359 - -1.7
345,359 - +0.2
345,374 + -1.6
345,374 + -1.4
345,374 + -0.9
345,374 + +0.7
345,374 + -0.5
345,374 + -1.6
345,374 + +1.9
345,375 - +0.0
345,375 - +1.9
345,702 + +0.8
345,702 + -0.2
345,702 + +0.7
345,702 + +1.6
345,702 + +0.1
345,702 + +1.5
345,703 - -0.2
345,703 - +1.1
345,703 - +0.8
345,703 - -2.0
345,703 - -2.3
345,703 - -1.2
345,723 + -0.0
345,723 + -1.8
345,723 + -1.5
345,724 - +0.8
345,724 - -0.9
345,724 - +1.1
345,724 - +1.9
345,724 - -0.8
345,724 - +0.3
345,724 - +0.7
345,778 - -1.7
345,778 - -2.1
345,778 - +0.6
345,778 - -1.1
345,778 - +0.9
345,832 - +0.4

Or see this region's nucleotide sequence