Experiment: Nalidixic 0.00390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3122 and Psest_3123 are separated by 162 nucleotides Psest_3123 and Psest_3124 overlap by 4 nucleotides Psest_3124 and Psest_3125 are separated by 109 nucleotides
Psest_3122: Psest_3122 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 3,298,553 to 3,299,470
_3122
Psest_3123: Psest_3123 - dihydroorotase, homodimeric type, at 3,299,633 to 3,300,676
_3123
Psest_3124: Psest_3124 - ribonuclease T, at 3,300,673 to 3,301,347
_3124
Psest_3125: Psest_3125 - threonine synthase, at 3,301,457 to 3,302,866
_3125
Position (kb)
3299
3300
3301 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3298.758 kb on + strand, within Psest_3122 at 3298.759 kb on - strand, within Psest_3122 at 3298.844 kb on + strand, within Psest_3122 at 3298.845 kb on - strand, within Psest_3122 at 3298.845 kb on - strand, within Psest_3122 at 3298.845 kb on - strand, within Psest_3122 at 3298.889 kb on - strand, within Psest_3122 at 3298.993 kb on + strand, within Psest_3122 at 3299.056 kb on + strand, within Psest_3122 at 3299.056 kb on + strand, within Psest_3122 at 3299.057 kb on - strand, within Psest_3122 at 3299.492 kb on + strand at 3299.492 kb on + strand at 3299.492 kb on + strand at 3299.493 kb on - strand at 3299.501 kb on + strand at 3299.501 kb on + strand at 3299.502 kb on - strand at 3299.502 kb on - strand at 3299.502 kb on - strand at 3299.502 kb on - strand at 3299.502 kb on - strand at 3299.502 kb on - strand at 3299.861 kb on + strand, within Psest_3123 at 3299.861 kb on + strand, within Psest_3123 at 3300.108 kb on + strand, within Psest_3123 at 3300.108 kb on + strand, within Psest_3123 at 3300.431 kb on + strand, within Psest_3123 at 3300.433 kb on + strand, within Psest_3123 at 3300.434 kb on - strand, within Psest_3123 at 3300.458 kb on + strand, within Psest_3123 at 3300.458 kb on + strand, within Psest_3123 at 3300.458 kb on + strand, within Psest_3123 at 3300.459 kb on - strand, within Psest_3123 at 3300.550 kb on + strand, within Psest_3123 at 3301.016 kb on + strand, within Psest_3124 at 3301.016 kb on + strand, within Psest_3124
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.00390625 mg/ml remove 3,298,758 + Psest_3122 0.22 -0.6 3,298,759 - Psest_3122 0.22 -1.1 3,298,844 + Psest_3122 0.32 -0.3 3,298,845 - Psest_3122 0.32 -0.7 3,298,845 - Psest_3122 0.32 +0.4 3,298,845 - Psest_3122 0.32 +0.9 3,298,889 - Psest_3122 0.37 -1.8 3,298,993 + Psest_3122 0.48 +0.8 3,299,056 + Psest_3122 0.55 -0.7 3,299,056 + Psest_3122 0.55 -0.4 3,299,057 - Psest_3122 0.55 -0.5 3,299,492 + -0.5 3,299,492 + -0.5 3,299,492 + -0.2 3,299,493 - -0.3 3,299,501 + -1.6 3,299,501 + -0.6 3,299,502 - +1.3 3,299,502 - +0.5 3,299,502 - +0.2 3,299,502 - +0.1 3,299,502 - +0.6 3,299,502 - +0.0 3,299,861 + Psest_3123 0.22 +2.8 3,299,861 + Psest_3123 0.22 -0.3 3,300,108 + Psest_3123 0.45 +2.8 3,300,108 + Psest_3123 0.45 +1.5 3,300,431 + Psest_3123 0.76 +2.6 3,300,433 + Psest_3123 0.77 +3.8 3,300,434 - Psest_3123 0.77 +2.2 3,300,458 + Psest_3123 0.79 +1.8 3,300,458 + Psest_3123 0.79 +2.8 3,300,458 + Psest_3123 0.79 +2.8 3,300,459 - Psest_3123 0.79 +2.8 3,300,550 + Psest_3123 0.88 +2.2 3,301,016 + Psest_3124 0.51 +1.8 3,301,016 + Psest_3124 0.51 +1.0
Or see this region's nucleotide sequence