Experiment: Nalidixic 0.00390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2903 and Psest_2904 are separated by 51 nucleotides Psest_2904 and Psest_2905 overlap by 1 nucleotides Psest_2905 and Psest_2906 are separated by 77 nucleotides Psest_2906 and Psest_2907 are separated by 91 nucleotides Psest_2907 and Psest_2908 overlap by 4 nucleotides
Psest_2903: Psest_2903 - Site-specific recombinase XerD, at 3,097,094 to 3,098,092
_2903
Psest_2904: Psest_2904 - hypothetical protein, at 3,098,144 to 3,098,314
_2904
Psest_2905: Psest_2905 - Protein involved in cell division, at 3,098,314 to 3,098,910
_2905
Psest_2906: Psest_2906 - tRNA_Thr_CGT, at 3,098,988 to 3,099,063
_2906
Psest_2907: Psest_2907 - Protein of unknown function (DUF3618)., at 3,099,155 to 3,099,916
_2907
Psest_2908: Psest_2908 - Protein of unknown function (DUF1469)., at 3,099,913 to 3,100,338
_2908
Position (kb)
3098
3099
3100 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3098.090 kb on + strand at 3098.100 kb on + strand at 3098.109 kb on - strand at 3098.109 kb on - strand at 3098.110 kb on + strand at 3098.111 kb on - strand at 3098.111 kb on - strand at 3098.322 kb on + strand at 3098.326 kb on + strand at 3098.326 kb on + strand at 3098.326 kb on + strand at 3098.326 kb on + strand at 3098.326 kb on + strand at 3098.327 kb on - strand at 3098.327 kb on - strand at 3098.327 kb on - strand at 3098.474 kb on - strand, within Psest_2905 at 3098.485 kb on + strand, within Psest_2905 at 3098.485 kb on + strand, within Psest_2905 at 3098.485 kb on + strand, within Psest_2905 at 3098.486 kb on - strand, within Psest_2905 at 3098.486 kb on - strand, within Psest_2905 at 3098.486 kb on - strand, within Psest_2905 at 3098.543 kb on + strand, within Psest_2905 at 3098.543 kb on + strand, within Psest_2905 at 3098.543 kb on + strand, within Psest_2905 at 3098.543 kb on + strand, within Psest_2905 at 3098.543 kb on + strand, within Psest_2905 at 3098.543 kb on + strand, within Psest_2905 at 3098.543 kb on + strand, within Psest_2905 at 3098.543 kb on + strand, within Psest_2905 at 3098.543 kb on + strand, within Psest_2905 at 3098.543 kb on + strand, within Psest_2905 at 3098.543 kb on + strand, within Psest_2905 at 3098.543 kb on + strand, within Psest_2905 at 3098.543 kb on + strand, within Psest_2905 at 3098.543 kb on + strand, within Psest_2905 at 3098.544 kb on - strand, within Psest_2905 at 3098.544 kb on - strand, within Psest_2905 at 3098.544 kb on - strand, within Psest_2905 at 3098.544 kb on - strand, within Psest_2905 at 3098.544 kb on - strand, within Psest_2905 at 3098.544 kb on - strand, within Psest_2905 at 3098.544 kb on - strand, within Psest_2905 at 3098.544 kb on - strand, within Psest_2905 at 3098.544 kb on - strand, within Psest_2905 at 3098.544 kb on - strand, within Psest_2905 at 3098.544 kb on - strand, within Psest_2905 at 3098.544 kb on - strand, within Psest_2905 at 3098.544 kb on - strand, within Psest_2905 at 3098.544 kb on - strand, within Psest_2905 at 3098.544 kb on - strand, within Psest_2905 at 3098.544 kb on - strand, within Psest_2905 at 3098.544 kb on - strand, within Psest_2905 at 3098.547 kb on + strand, within Psest_2905 at 3098.547 kb on + strand, within Psest_2905 at 3098.547 kb on + strand, within Psest_2905 at 3098.548 kb on - strand, within Psest_2905 at 3098.548 kb on - strand, within Psest_2905 at 3098.572 kb on - strand, within Psest_2905 at 3098.610 kb on + strand, within Psest_2905 at 3098.648 kb on - strand, within Psest_2905 at 3098.648 kb on - strand, within Psest_2905 at 3098.648 kb on - strand, within Psest_2905 at 3098.695 kb on + strand, within Psest_2905 at 3098.709 kb on + strand, within Psest_2905 at 3098.785 kb on + strand, within Psest_2905 at 3098.858 kb on - strand at 3098.874 kb on + strand at 3098.874 kb on + strand at 3098.874 kb on + strand at 3098.890 kb on - strand at 3099.027 kb on + strand, within Psest_2906 at 3099.044 kb on - strand, within Psest_2906 at 3099.044 kb on - strand, within Psest_2906 at 3099.047 kb on + strand, within Psest_2906 at 3099.047 kb on + strand, within Psest_2906 at 3099.048 kb on - strand, within Psest_2906 at 3099.048 kb on - strand, within Psest_2906 at 3099.055 kb on + strand, within Psest_2906 at 3099.056 kb on - strand at 3099.056 kb on - strand at 3099.633 kb on + strand, within Psest_2907 at 3099.634 kb on - strand, within Psest_2907 at 3099.890 kb on + strand at 3099.891 kb on - strand at 3099.891 kb on - strand at 3099.891 kb on - strand at 3099.891 kb on - strand at 3099.897 kb on - strand at 3099.904 kb on + strand at 3099.904 kb on + strand at 3099.905 kb on - strand at 3099.911 kb on - strand at 3099.911 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.00390625 mg/ml remove 3,098,090 + +0.1 3,098,100 + -1.6 3,098,109 - +0.1 3,098,109 - +2.5 3,098,110 + -0.3 3,098,111 - +1.0 3,098,111 - -0.6 3,098,322 + +1.1 3,098,326 + +0.2 3,098,326 + +0.5 3,098,326 + -2.1 3,098,326 + +0.2 3,098,326 + -0.7 3,098,327 - -1.6 3,098,327 - -1.1 3,098,327 - +0.2 3,098,474 - Psest_2905 0.27 +0.9 3,098,485 + Psest_2905 0.29 -0.7 3,098,485 + Psest_2905 0.29 -0.1 3,098,485 + Psest_2905 0.29 +0.4 3,098,486 - Psest_2905 0.29 +2.1 3,098,486 - Psest_2905 0.29 +0.7 3,098,486 - Psest_2905 0.29 -0.6 3,098,543 + Psest_2905 0.38 +1.2 3,098,543 + Psest_2905 0.38 +0.8 3,098,543 + Psest_2905 0.38 -1.8 3,098,543 + Psest_2905 0.38 -0.8 3,098,543 + Psest_2905 0.38 +0.5 3,098,543 + Psest_2905 0.38 +0.9 3,098,543 + Psest_2905 0.38 -1.2 3,098,543 + Psest_2905 0.38 +1.2 3,098,543 + Psest_2905 0.38 -0.6 3,098,543 + Psest_2905 0.38 +0.0 3,098,543 + Psest_2905 0.38 +2.5 3,098,543 + Psest_2905 0.38 +0.4 3,098,543 + Psest_2905 0.38 -0.7 3,098,543 + Psest_2905 0.38 -0.7 3,098,544 - Psest_2905 0.39 +2.0 3,098,544 - Psest_2905 0.39 -1.3 3,098,544 - Psest_2905 0.39 -0.3 3,098,544 - Psest_2905 0.39 -0.8 3,098,544 - Psest_2905 0.39 -1.8 3,098,544 - Psest_2905 0.39 -1.6 3,098,544 - Psest_2905 0.39 -0.2 3,098,544 - Psest_2905 0.39 -1.5 3,098,544 - Psest_2905 0.39 +1.6 3,098,544 - Psest_2905 0.39 -0.8 3,098,544 - Psest_2905 0.39 -0.8 3,098,544 - Psest_2905 0.39 +1.1 3,098,544 - Psest_2905 0.39 -1.7 3,098,544 - Psest_2905 0.39 +0.7 3,098,544 - Psest_2905 0.39 -0.8 3,098,544 - Psest_2905 0.39 -0.9 3,098,544 - Psest_2905 0.39 +0.7 3,098,547 + Psest_2905 0.39 -0.7 3,098,547 + Psest_2905 0.39 +1.5 3,098,547 + Psest_2905 0.39 -0.3 3,098,548 - Psest_2905 0.39 -0.0 3,098,548 - Psest_2905 0.39 -0.6 3,098,572 - Psest_2905 0.43 +1.4 3,098,610 + Psest_2905 0.50 -1.0 3,098,648 - Psest_2905 0.56 +0.9 3,098,648 - Psest_2905 0.56 +1.7 3,098,648 - Psest_2905 0.56 -1.2 3,098,695 + Psest_2905 0.64 +0.8 3,098,709 + Psest_2905 0.66 +1.1 3,098,785 + Psest_2905 0.79 +0.2 3,098,858 - +0.6 3,098,874 + -0.4 3,098,874 + +0.8 3,098,874 + +3.6 3,098,890 - +1.6 3,099,027 + Psest_2906 0.51 +0.4 3,099,044 - Psest_2906 0.74 +0.5 3,099,044 - Psest_2906 0.74 -1.4 3,099,047 + Psest_2906 0.78 +1.6 3,099,047 + Psest_2906 0.78 +0.5 3,099,048 - Psest_2906 0.79 +0.2 3,099,048 - Psest_2906 0.79 +3.3 3,099,055 + Psest_2906 0.88 +0.8 3,099,056 - +1.0 3,099,056 - -0.8 3,099,633 + Psest_2907 0.63 +1.4 3,099,634 - Psest_2907 0.63 -0.0 3,099,890 + -1.2 3,099,891 - +0.1 3,099,891 - +0.8 3,099,891 - +0.3 3,099,891 - -0.6 3,099,897 - -0.2 3,099,904 + +1.0 3,099,904 + -0.7 3,099,905 - +1.6 3,099,911 - +0.1 3,099,911 - +0.2
Or see this region's nucleotide sequence