Experiment: Nalidixic 0.00390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2717 and Psest_2718 are separated by 12 nucleotides Psest_2718 and Psest_2719 are separated by 55 nucleotides Psest_2719 and Psest_2720 are separated by 141 nucleotides Psest_2720 and Psest_2721 are separated by 127 nucleotides
Psest_2717: Psest_2717 - Succinylglutamate desuccinylase, at 2,906,382 to 2,907,380
_2717
Psest_2718: Psest_2718 - hypothetical protein, at 2,907,393 to 2,907,674
_2718
Psest_2719: Psest_2719 - acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family, at 2,907,730 to 2,908,950
_2719
Psest_2720: Psest_2720 - Enoyl-CoA hydratase/carnithine racemase, at 2,909,092 to 2,909,781
_2720
Psest_2721: Psest_2721 - HD-GYP domain, at 2,909,909 to 2,911,198
_2721
Position (kb)
2907
2908
2909 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6 at 2906.938 kb on + strand, within Psest_2717 at 2906.939 kb on - strand, within Psest_2717 at 2907.024 kb on + strand, within Psest_2717 at 2907.024 kb on + strand, within Psest_2717 at 2907.024 kb on + strand, within Psest_2717 at 2907.025 kb on - strand, within Psest_2717 at 2907.025 kb on - strand, within Psest_2717 at 2907.025 kb on - strand, within Psest_2717 at 2907.183 kb on + strand, within Psest_2717 at 2907.183 kb on + strand, within Psest_2717 at 2907.183 kb on + strand, within Psest_2717 at 2907.183 kb on + strand, within Psest_2717 at 2907.183 kb on + strand, within Psest_2717 at 2907.183 kb on + strand, within Psest_2717 at 2907.183 kb on + strand, within Psest_2717 at 2907.183 kb on + strand, within Psest_2717 at 2907.183 kb on + strand, within Psest_2717 at 2907.184 kb on - strand, within Psest_2717 at 2907.184 kb on - strand, within Psest_2717 at 2907.184 kb on - strand, within Psest_2717 at 2907.184 kb on - strand, within Psest_2717 at 2907.184 kb on - strand, within Psest_2717 at 2907.184 kb on - strand, within Psest_2717 at 2907.184 kb on - strand, within Psest_2717 at 2907.184 kb on - strand, within Psest_2717 at 2907.508 kb on + strand, within Psest_2718 at 2907.535 kb on - strand, within Psest_2718 at 2907.577 kb on - strand, within Psest_2718 at 2907.676 kb on + strand at 2907.676 kb on + strand at 2907.676 kb on + strand at 2907.677 kb on - strand at 2907.677 kb on - strand at 2907.965 kb on + strand, within Psest_2719 at 2908.230 kb on - strand, within Psest_2719 at 2908.329 kb on - strand, within Psest_2719 at 2908.482 kb on - strand, within Psest_2719 at 2908.572 kb on - strand, within Psest_2719 at 2908.709 kb on + strand, within Psest_2719 at 2908.709 kb on + strand, within Psest_2719 at 2908.709 kb on + strand, within Psest_2719 at 2908.709 kb on + strand, within Psest_2719 at 2908.709 kb on + strand, within Psest_2719 at 2908.709 kb on + strand, within Psest_2719 at 2908.710 kb on - strand, within Psest_2719 at 2908.710 kb on - strand, within Psest_2719 at 2908.710 kb on - strand, within Psest_2719 at 2908.710 kb on - strand, within Psest_2719 at 2908.710 kb on - strand, within Psest_2719 at 2909.027 kb on + strand at 2909.028 kb on - strand at 2909.187 kb on + strand, within Psest_2720 at 2909.188 kb on - strand, within Psest_2720 at 2909.188 kb on - strand, within Psest_2720 at 2909.251 kb on + strand, within Psest_2720 at 2909.251 kb on + strand, within Psest_2720 at 2909.252 kb on - strand, within Psest_2720 at 2909.252 kb on - strand, within Psest_2720 at 2909.693 kb on - strand, within Psest_2720 at 2909.763 kb on - strand at 2909.763 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.00390625 mg/ml remove 2,906,938 + Psest_2717 0.56 +0.3 2,906,939 - Psest_2717 0.56 -0.6 2,907,024 + Psest_2717 0.64 +0.2 2,907,024 + Psest_2717 0.64 +1.6 2,907,024 + Psest_2717 0.64 -0.1 2,907,025 - Psest_2717 0.64 -0.1 2,907,025 - Psest_2717 0.64 -1.2 2,907,025 - Psest_2717 0.64 -0.2 2,907,183 + Psest_2717 0.80 +0.5 2,907,183 + Psest_2717 0.80 +1.3 2,907,183 + Psest_2717 0.80 -0.5 2,907,183 + Psest_2717 0.80 +0.6 2,907,183 + Psest_2717 0.80 -0.7 2,907,183 + Psest_2717 0.80 +1.4 2,907,183 + Psest_2717 0.80 -0.2 2,907,183 + Psest_2717 0.80 -1.4 2,907,183 + Psest_2717 0.80 -0.9 2,907,184 - Psest_2717 0.80 -0.6 2,907,184 - Psest_2717 0.80 +0.1 2,907,184 - Psest_2717 0.80 +0.4 2,907,184 - Psest_2717 0.80 +1.0 2,907,184 - Psest_2717 0.80 -1.1 2,907,184 - Psest_2717 0.80 -0.1 2,907,184 - Psest_2717 0.80 -2.1 2,907,184 - Psest_2717 0.80 -0.6 2,907,508 + Psest_2718 0.41 +1.2 2,907,535 - Psest_2718 0.50 +0.3 2,907,577 - Psest_2718 0.65 +0.8 2,907,676 + +2.0 2,907,676 + +0.3 2,907,676 + +0.2 2,907,677 - +0.6 2,907,677 - +1.4 2,907,965 + Psest_2719 0.19 -0.8 2,908,230 - Psest_2719 0.41 +4.1 2,908,329 - Psest_2719 0.49 +3.1 2,908,482 - Psest_2719 0.62 +1.8 2,908,572 - Psest_2719 0.69 +5.8 2,908,709 + Psest_2719 0.80 +0.8 2,908,709 + Psest_2719 0.80 +3.1 2,908,709 + Psest_2719 0.80 +1.5 2,908,709 + Psest_2719 0.80 +2.1 2,908,709 + Psest_2719 0.80 +2.5 2,908,709 + Psest_2719 0.80 +1.8 2,908,710 - Psest_2719 0.80 +3.1 2,908,710 - Psest_2719 0.80 +2.5 2,908,710 - Psest_2719 0.80 +2.1 2,908,710 - Psest_2719 0.80 +1.1 2,908,710 - Psest_2719 0.80 +6.1 2,909,027 + -0.1 2,909,028 - +0.3 2,909,187 + Psest_2720 0.14 +0.8 2,909,188 - Psest_2720 0.14 +1.8 2,909,188 - Psest_2720 0.14 +0.1 2,909,251 + Psest_2720 0.23 -2.4 2,909,251 + Psest_2720 0.23 -1.9 2,909,252 - Psest_2720 0.23 +1.0 2,909,252 - Psest_2720 0.23 +0.8 2,909,693 - Psest_2720 0.87 -0.2 2,909,763 - -0.2 2,909,763 - +1.0
Or see this region's nucleotide sequence