Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2698

Experiment: Nalidixic 0.00390625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2697 and Psest_2698 are separated by 103 nucleotidesPsest_2698 and Psest_2699 are separated by 0 nucleotides Psest_2697: Psest_2697 - 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases, at 2,886,413 to 2,887,423 _2697 Psest_2698: Psest_2698 - benzoate 1,2-dioxygenase, small subunit, at 2,887,527 to 2,888,015 _2698 Psest_2699: Psest_2699 - benzoate 1,2-dioxygenase, large subunit, at 2,888,016 to 2,889,377 _2699 Position (kb) 2887 2888 2889Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2886.573 kb on + strand, within Psest_2697at 2886.573 kb on + strand, within Psest_2697at 2886.573 kb on + strand, within Psest_2697at 2886.573 kb on + strand, within Psest_2697at 2886.573 kb on + strand, within Psest_2697at 2886.574 kb on - strand, within Psest_2697at 2886.621 kb on + strand, within Psest_2697at 2886.621 kb on + strand, within Psest_2697at 2886.621 kb on + strand, within Psest_2697at 2886.622 kb on - strand, within Psest_2697at 2886.699 kb on + strand, within Psest_2697at 2886.699 kb on + strand, within Psest_2697at 2886.699 kb on + strand, within Psest_2697at 2886.700 kb on - strand, within Psest_2697at 2886.700 kb on - strand, within Psest_2697at 2886.700 kb on - strand, within Psest_2697at 2886.820 kb on - strand, within Psest_2697at 2886.820 kb on - strand, within Psest_2697at 2886.820 kb on - strand, within Psest_2697at 2886.820 kb on - strand, within Psest_2697at 2886.820 kb on - strand, within Psest_2697at 2886.961 kb on - strand, within Psest_2697at 2887.002 kb on + strand, within Psest_2697at 2887.002 kb on + strand, within Psest_2697at 2887.002 kb on + strand, within Psest_2697at 2887.003 kb on - strand, within Psest_2697at 2887.104 kb on + strand, within Psest_2697at 2887.104 kb on + strand, within Psest_2697at 2887.105 kb on - strand, within Psest_2697at 2887.236 kb on + strand, within Psest_2697at 2887.236 kb on + strand, within Psest_2697at 2887.237 kb on - strand, within Psest_2697at 2887.237 kb on - strand, within Psest_2697at 2887.237 kb on - strand, within Psest_2697at 2887.237 kb on - strand, within Psest_2697at 2887.237 kb on - strand, within Psest_2697at 2887.279 kb on + strand, within Psest_2697at 2887.279 kb on + strand, within Psest_2697at 2887.279 kb on + strand, within Psest_2697at 2887.335 kb on + strandat 2887.335 kb on + strandat 2887.483 kb on + strandat 2887.483 kb on + strandat 2887.484 kb on - strandat 2887.484 kb on - strandat 2887.484 kb on - strandat 2887.484 kb on - strandat 2887.484 kb on - strandat 2887.537 kb on + strandat 2887.561 kb on + strandat 2887.561 kb on + strandat 2887.561 kb on + strandat 2887.562 kb on - strandat 2887.562 kb on - strandat 2887.562 kb on - strandat 2887.627 kb on + strand, within Psest_2698at 2887.627 kb on + strand, within Psest_2698at 2887.627 kb on + strand, within Psest_2698at 2887.628 kb on - strand, within Psest_2698at 2887.628 kb on - strand, within Psest_2698at 2887.628 kb on - strand, within Psest_2698at 2887.643 kb on - strand, within Psest_2698at 2887.754 kb on + strand, within Psest_2698at 2887.755 kb on - strand, within Psest_2698at 2887.924 kb on + strand, within Psest_2698at 2887.964 kb on - strand, within Psest_2698at 2888.104 kb on + strandat 2888.104 kb on + strandat 2888.104 kb on + strandat 2888.104 kb on + strandat 2888.104 kb on + strandat 2888.105 kb on - strandat 2888.105 kb on - strandat 2888.105 kb on - strandat 2888.105 kb on - strandat 2888.210 kb on + strand, within Psest_2699at 2888.210 kb on + strand, within Psest_2699at 2888.210 kb on + strand, within Psest_2699at 2888.210 kb on + strand, within Psest_2699at 2888.210 kb on + strand, within Psest_2699at 2888.210 kb on + strand, within Psest_2699at 2888.371 kb on + strand, within Psest_2699at 2888.371 kb on + strand, within Psest_2699at 2888.371 kb on + strand, within Psest_2699at 2888.371 kb on + strand, within Psest_2699at 2888.371 kb on + strand, within Psest_2699at 2888.371 kb on + strand, within Psest_2699at 2888.371 kb on + strand, within Psest_2699at 2888.372 kb on - strand, within Psest_2699at 2888.372 kb on - strand, within Psest_2699at 2888.372 kb on - strand, within Psest_2699at 2888.372 kb on - strand, within Psest_2699at 2888.414 kb on + strand, within Psest_2699at 2888.447 kb on - strand, within Psest_2699at 2888.447 kb on - strand, within Psest_2699at 2888.608 kb on + strand, within Psest_2699at 2888.704 kb on + strand, within Psest_2699at 2888.782 kb on + strand, within Psest_2699at 2888.782 kb on + strand, within Psest_2699at 2888.782 kb on + strand, within Psest_2699at 2888.782 kb on + strand, within Psest_2699at 2888.783 kb on - strand, within Psest_2699at 2888.783 kb on - strand, within Psest_2699at 2888.783 kb on - strand, within Psest_2699at 2888.783 kb on - strand, within Psest_2699

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.00390625 mg/ml
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2,886,573 + Psest_2697 0.16 +1.0
2,886,573 + Psest_2697 0.16 +1.8
2,886,573 + Psest_2697 0.16 +0.2
2,886,573 + Psest_2697 0.16 +0.9
2,886,573 + Psest_2697 0.16 -0.9
2,886,574 - Psest_2697 0.16 +0.2
2,886,621 + Psest_2697 0.21 -1.0
2,886,621 + Psest_2697 0.21 +0.3
2,886,621 + Psest_2697 0.21 +0.4
2,886,622 - Psest_2697 0.21 -1.2
2,886,699 + Psest_2697 0.28 -0.7
2,886,699 + Psest_2697 0.28 +0.1
2,886,699 + Psest_2697 0.28 -1.1
2,886,700 - Psest_2697 0.28 -0.1
2,886,700 - Psest_2697 0.28 +1.6
2,886,700 - Psest_2697 0.28 -1.6
2,886,820 - Psest_2697 0.40 +0.3
2,886,820 - Psest_2697 0.40 -0.5
2,886,820 - Psest_2697 0.40 -0.0
2,886,820 - Psest_2697 0.40 +0.4
2,886,820 - Psest_2697 0.40 -0.4
2,886,961 - Psest_2697 0.54 +1.6
2,887,002 + Psest_2697 0.58 +1.0
2,887,002 + Psest_2697 0.58 -0.3
2,887,002 + Psest_2697 0.58 -0.9
2,887,003 - Psest_2697 0.58 -0.7
2,887,104 + Psest_2697 0.68 -0.6
2,887,104 + Psest_2697 0.68 -0.7
2,887,105 - Psest_2697 0.68 -1.4
2,887,236 + Psest_2697 0.81 -0.7
2,887,236 + Psest_2697 0.81 +1.8
2,887,237 - Psest_2697 0.82 -0.7
2,887,237 - Psest_2697 0.82 -0.4
2,887,237 - Psest_2697 0.82 -0.7
2,887,237 - Psest_2697 0.82 +0.7
2,887,237 - Psest_2697 0.82 -0.1
2,887,279 + Psest_2697 0.86 -1.1
2,887,279 + Psest_2697 0.86 -0.2
2,887,279 + Psest_2697 0.86 +3.2
2,887,335 + -0.2
2,887,335 + -0.3
2,887,483 + -0.5
2,887,483 + -0.6
2,887,484 - +0.3
2,887,484 - -0.1
2,887,484 - -1.1
2,887,484 - -0.9
2,887,484 - +0.1
2,887,537 + +0.4
2,887,561 + -0.9
2,887,561 + -1.9
2,887,561 + -0.3
2,887,562 - +0.1
2,887,562 - -0.7
2,887,562 - -1.0
2,887,627 + Psest_2698 0.20 +2.9
2,887,627 + Psest_2698 0.20 -0.2
2,887,627 + Psest_2698 0.20 -0.8
2,887,628 - Psest_2698 0.21 -0.8
2,887,628 - Psest_2698 0.21 +2.4
2,887,628 - Psest_2698 0.21 +1.4
2,887,643 - Psest_2698 0.24 +0.1
2,887,754 + Psest_2698 0.46 -0.7
2,887,755 - Psest_2698 0.47 -1.0
2,887,924 + Psest_2698 0.81 +1.4
2,887,964 - Psest_2698 0.89 -0.5
2,888,104 + +0.2
2,888,104 + +0.4
2,888,104 + -0.9
2,888,104 + -0.3
2,888,104 + +0.8
2,888,105 - -0.0
2,888,105 - -0.2
2,888,105 - +0.2
2,888,105 - +0.2
2,888,210 + Psest_2699 0.14 -1.3
2,888,210 + Psest_2699 0.14 -1.9
2,888,210 + Psest_2699 0.14 +0.1
2,888,210 + Psest_2699 0.14 -2.0
2,888,210 + Psest_2699 0.14 +0.2
2,888,210 + Psest_2699 0.14 +0.5
2,888,371 + Psest_2699 0.26 +0.6
2,888,371 + Psest_2699 0.26 -0.4
2,888,371 + Psest_2699 0.26 +1.5
2,888,371 + Psest_2699 0.26 +0.6
2,888,371 + Psest_2699 0.26 -0.9
2,888,371 + Psest_2699 0.26 -0.4
2,888,371 + Psest_2699 0.26 -1.2
2,888,372 - Psest_2699 0.26 +1.2
2,888,372 - Psest_2699 0.26 +0.0
2,888,372 - Psest_2699 0.26 -1.1
2,888,372 - Psest_2699 0.26 -0.5
2,888,414 + Psest_2699 0.29 +0.5
2,888,447 - Psest_2699 0.32 -1.2
2,888,447 - Psest_2699 0.32 +0.8
2,888,608 + Psest_2699 0.43 -1.9
2,888,704 + Psest_2699 0.51 -0.7
2,888,782 + Psest_2699 0.56 +4.3
2,888,782 + Psest_2699 0.56 -0.4
2,888,782 + Psest_2699 0.56 +0.7
2,888,782 + Psest_2699 0.56 +0.5
2,888,783 - Psest_2699 0.56 +0.8
2,888,783 - Psest_2699 0.56 -1.3
2,888,783 - Psest_2699 0.56 +0.3
2,888,783 - Psest_2699 0.56 +0.7

Or see this region's nucleotide sequence