Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2652

Experiment: Nalidixic 0.00390625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2651 and Psest_2652 are separated by 288 nucleotidesPsest_2652 and Psest_2653 are separated by 131 nucleotides Psest_2651: Psest_2651 - DNA topoisomerase I, bacterial, at 2,832,197 to 2,834,800 _2651 Psest_2652: Psest_2652 - Protein of unknown function (DUF1653)., at 2,835,089 to 2,835,322 _2652 Psest_2653: Psest_2653 - fatty oxidation complex, beta subunit FadA, at 2,835,454 to 2,836,629 _2653 Position (kb) 2835 2836Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2834.823 kb on - strandat 2835.009 kb on + strandat 2835.010 kb on - strandat 2835.010 kb on - strandat 2835.033 kb on - strandat 2835.033 kb on - strandat 2835.033 kb on - strandat 2835.033 kb on - strandat 2835.034 kb on + strandat 2835.034 kb on + strandat 2835.034 kb on + strandat 2835.034 kb on + strandat 2835.034 kb on + strandat 2835.034 kb on + strandat 2835.034 kb on + strandat 2835.034 kb on + strandat 2835.034 kb on + strandat 2835.034 kb on + strandat 2835.034 kb on + strandat 2835.034 kb on + strandat 2835.035 kb on - strandat 2835.035 kb on - strandat 2835.035 kb on - strandat 2835.035 kb on - strandat 2835.035 kb on - strandat 2835.035 kb on - strandat 2835.035 kb on - strandat 2835.035 kb on - strandat 2835.035 kb on - strandat 2835.035 kb on - strandat 2835.035 kb on - strandat 2835.035 kb on - strandat 2835.035 kb on - strandat 2835.035 kb on - strandat 2835.035 kb on - strandat 2835.035 kb on - strandat 2835.035 kb on - strandat 2835.035 kb on - strandat 2835.035 kb on - strandat 2835.035 kb on - strandat 2835.035 kb on - strandat 2835.035 kb on - strandat 2835.035 kb on - strandat 2835.035 kb on - strandat 2835.035 kb on - strandat 2835.035 kb on - strandat 2835.035 kb on - strandat 2835.035 kb on - strandat 2835.035 kb on - strandat 2835.036 kb on + strandat 2835.036 kb on + strandat 2835.036 kb on + strandat 2835.036 kb on + strandat 2835.036 kb on + strandat 2835.036 kb on + strandat 2835.036 kb on + strandat 2835.036 kb on + strandat 2835.036 kb on + strandat 2835.036 kb on + strandat 2835.036 kb on + strandat 2835.036 kb on + strandat 2835.036 kb on + strandat 2835.036 kb on + strandat 2835.036 kb on + strandat 2835.036 kb on + strandat 2835.036 kb on + strandat 2835.036 kb on + strandat 2835.036 kb on + strandat 2835.036 kb on + strandat 2835.036 kb on + strandat 2835.037 kb on - strandat 2835.037 kb on - strandat 2835.037 kb on - strandat 2835.037 kb on - strandat 2835.037 kb on - strandat 2835.037 kb on - strandat 2835.037 kb on - strandat 2835.037 kb on - strandat 2835.037 kb on - strandat 2835.037 kb on - strandat 2835.037 kb on - strandat 2835.037 kb on - strandat 2835.037 kb on - strandat 2835.037 kb on - strandat 2835.037 kb on - strandat 2835.037 kb on - strandat 2835.037 kb on - strandat 2835.037 kb on - strandat 2835.037 kb on - strandat 2835.037 kb on - strandat 2835.037 kb on - strandat 2835.037 kb on - strandat 2835.037 kb on - strandat 2835.037 kb on - strandat 2835.038 kb on + strandat 2835.038 kb on + strandat 2835.039 kb on - strandat 2835.039 kb on - strandat 2835.039 kb on - strandat 2835.039 kb on - strandat 2835.039 kb on - strandat 2835.039 kb on - strandat 2835.211 kb on - strand, within Psest_2652at 2835.223 kb on - strand, within Psest_2652at 2835.223 kb on - strand, within Psest_2652at 2835.291 kb on + strand, within Psest_2652at 2835.291 kb on + strand, within Psest_2652at 2835.291 kb on + strand, within Psest_2652at 2835.291 kb on + strand, within Psest_2652at 2835.292 kb on - strand, within Psest_2652at 2835.292 kb on - strand, within Psest_2652at 2835.396 kb on + strandat 2835.396 kb on + strandat 2835.397 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.00390625 mg/ml
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2,834,823 - -0.6
2,835,009 + +0.2
2,835,010 - +1.0
2,835,010 - -1.1
2,835,033 - +2.5
2,835,033 - +0.6
2,835,033 - +1.3
2,835,033 - +1.6
2,835,034 + +0.2
2,835,034 + +0.6
2,835,034 + +0.1
2,835,034 + +1.3
2,835,034 + +0.9
2,835,034 + +1.9
2,835,034 + +0.9
2,835,034 + -1.3
2,835,034 + +0.0
2,835,034 + +0.9
2,835,034 + +1.8
2,835,034 + +0.3
2,835,035 - +1.8
2,835,035 - -0.1
2,835,035 - +0.7
2,835,035 - -0.2
2,835,035 - +0.1
2,835,035 - -0.1
2,835,035 - +1.6
2,835,035 - +0.5
2,835,035 - +1.1
2,835,035 - +1.5
2,835,035 - +1.7
2,835,035 - -0.9
2,835,035 - +0.5
2,835,035 - +0.1
2,835,035 - +0.4
2,835,035 - +1.1
2,835,035 - +0.2
2,835,035 - +1.7
2,835,035 - +1.3
2,835,035 - +0.2
2,835,035 - +0.2
2,835,035 - +0.3
2,835,035 - +0.6
2,835,035 - +1.3
2,835,035 - -0.3
2,835,035 - +2.4
2,835,035 - +1.2
2,835,035 - -0.4
2,835,035 - +1.2
2,835,036 + -0.2
2,835,036 + +1.6
2,835,036 + -0.5
2,835,036 + +1.5
2,835,036 + +1.2
2,835,036 + +1.0
2,835,036 + +1.9
2,835,036 + -1.1
2,835,036 + +0.4
2,835,036 + +0.5
2,835,036 + -1.5
2,835,036 + -0.1
2,835,036 + +0.3
2,835,036 + -0.9
2,835,036 + +0.5
2,835,036 + +0.9
2,835,036 + +0.3
2,835,036 + +0.4
2,835,036 + +0.7
2,835,036 + -0.3
2,835,036 + -3.0
2,835,037 - -0.7
2,835,037 - -0.1
2,835,037 - +1.8
2,835,037 - -0.5
2,835,037 - -0.4
2,835,037 - +2.2
2,835,037 - +1.4
2,835,037 - -0.2
2,835,037 - -2.2
2,835,037 - -1.1
2,835,037 - +0.0
2,835,037 - +0.5
2,835,037 - +0.3
2,835,037 - -0.9
2,835,037 - +1.6
2,835,037 - -0.3
2,835,037 - +0.5
2,835,037 - +0.6
2,835,037 - -0.2
2,835,037 - -0.8
2,835,037 - +3.6
2,835,037 - +1.1
2,835,037 - -0.1
2,835,037 - -0.2
2,835,038 + +2.2
2,835,038 + +1.2
2,835,039 - +0.4
2,835,039 - +1.4
2,835,039 - -0.4
2,835,039 - -0.2
2,835,039 - -1.1
2,835,039 - +0.3
2,835,211 - Psest_2652 0.52 -1.8
2,835,223 - Psest_2652 0.57 +0.6
2,835,223 - Psest_2652 0.57 -1.2
2,835,291 + Psest_2652 0.86 -1.1
2,835,291 + Psest_2652 0.86 -1.1
2,835,291 + Psest_2652 0.86 -0.8
2,835,291 + Psest_2652 0.86 -1.1
2,835,292 - Psest_2652 0.87 -0.3
2,835,292 - Psest_2652 0.87 -0.2
2,835,396 + -1.5
2,835,396 + +0.0
2,835,397 - -1.2

Or see this region's nucleotide sequence