Experiment: Nalidixic 0.00390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2623 and Psest_2624 are separated by 10 nucleotides Psest_2624 and Psest_2625 are separated by 15 nucleotides
Psest_2623: Psest_2623 - Flp pilus assembly protein TadG, at 2,805,236 to 2,806,570
_2623
Psest_2624: Psest_2624 - hypothetical protein, at 2,806,581 to 2,806,850
_2624
Psest_2625: Psest_2625 - Flp pilus assembly protein, secretin CpaC, at 2,806,866 to 2,808,380
_2625
Position (kb)
2806
2807 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2805.597 kb on + strand, within Psest_2623 at 2805.598 kb on - strand, within Psest_2623 at 2805.598 kb on - strand, within Psest_2623 at 2805.598 kb on - strand, within Psest_2623 at 2805.598 kb on - strand, within Psest_2623 at 2805.599 kb on + strand, within Psest_2623 at 2805.747 kb on + strand, within Psest_2623 at 2805.747 kb on + strand, within Psest_2623 at 2805.748 kb on - strand, within Psest_2623 at 2805.748 kb on - strand, within Psest_2623 at 2806.008 kb on + strand, within Psest_2623 at 2806.008 kb on + strand, within Psest_2623 at 2806.009 kb on - strand, within Psest_2623 at 2806.009 kb on - strand, within Psest_2623 at 2806.016 kb on - strand, within Psest_2623 at 2806.121 kb on - strand, within Psest_2623 at 2806.155 kb on + strand, within Psest_2623 at 2806.155 kb on + strand, within Psest_2623 at 2806.155 kb on + strand, within Psest_2623 at 2806.155 kb on + strand, within Psest_2623 at 2806.155 kb on + strand, within Psest_2623 at 2806.156 kb on - strand, within Psest_2623 at 2806.156 kb on - strand, within Psest_2623 at 2806.160 kb on - strand, within Psest_2623 at 2806.160 kb on - strand, within Psest_2623 at 2806.175 kb on + strand, within Psest_2623 at 2806.175 kb on + strand, within Psest_2623 at 2806.175 kb on + strand, within Psest_2623 at 2806.175 kb on + strand, within Psest_2623 at 2806.175 kb on + strand, within Psest_2623 at 2806.175 kb on + strand, within Psest_2623 at 2806.175 kb on + strand, within Psest_2623 at 2806.175 kb on + strand, within Psest_2623 at 2806.176 kb on - strand, within Psest_2623 at 2806.176 kb on - strand, within Psest_2623 at 2806.176 kb on - strand, within Psest_2623 at 2806.176 kb on - strand, within Psest_2623 at 2806.176 kb on - strand, within Psest_2623 at 2806.176 kb on - strand, within Psest_2623 at 2806.176 kb on - strand, within Psest_2623 at 2806.176 kb on - strand, within Psest_2623 at 2806.179 kb on + strand, within Psest_2623 at 2806.179 kb on + strand, within Psest_2623 at 2806.180 kb on - strand, within Psest_2623 at 2806.180 kb on - strand, within Psest_2623 at 2806.180 kb on - strand, within Psest_2623 at 2806.370 kb on + strand, within Psest_2623 at 2806.447 kb on + strand at 2806.447 kb on + strand at 2806.447 kb on + strand at 2806.448 kb on - strand at 2806.511 kb on + strand at 2806.511 kb on + strand at 2806.511 kb on + strand at 2806.512 kb on - strand at 2806.512 kb on - strand at 2806.512 kb on - strand at 2806.512 kb on - strand at 2806.512 kb on - strand at 2806.744 kb on + strand, within Psest_2624 at 2806.744 kb on + strand, within Psest_2624 at 2806.756 kb on + strand, within Psest_2624 at 2806.796 kb on - strand, within Psest_2624 at 2806.796 kb on - strand, within Psest_2624 at 2806.867 kb on + strand at 2806.867 kb on + strand at 2806.867 kb on + strand at 2806.868 kb on - strand at 2806.960 kb on + strand at 2806.960 kb on + strand at 2806.960 kb on + strand at 2806.961 kb on - strand at 2806.961 kb on - strand at 2806.961 kb on - strand at 2806.961 kb on - strand at 2807.080 kb on + strand, within Psest_2625 at 2807.080 kb on + strand, within Psest_2625 at 2807.080 kb on + strand, within Psest_2625 at 2807.080 kb on + strand, within Psest_2625 at 2807.080 kb on + strand, within Psest_2625 at 2807.080 kb on + strand, within Psest_2625 at 2807.080 kb on + strand, within Psest_2625 at 2807.080 kb on + strand, within Psest_2625 at 2807.080 kb on + strand, within Psest_2625 at 2807.080 kb on + strand, within Psest_2625 at 2807.080 kb on + strand, within Psest_2625 at 2807.081 kb on - strand, within Psest_2625 at 2807.081 kb on - strand, within Psest_2625 at 2807.081 kb on - strand, within Psest_2625 at 2807.081 kb on - strand, within Psest_2625 at 2807.147 kb on - strand, within Psest_2625 at 2807.147 kb on - strand, within Psest_2625 at 2807.147 kb on - strand, within Psest_2625 at 2807.147 kb on - strand, within Psest_2625 at 2807.402 kb on - strand, within Psest_2625 at 2807.402 kb on - strand, within Psest_2625 at 2807.649 kb on + strand, within Psest_2625 at 2807.649 kb on + strand, within Psest_2625 at 2807.650 kb on - strand, within Psest_2625 at 2807.650 kb on - strand, within Psest_2625 at 2807.650 kb on - strand, within Psest_2625
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.00390625 mg/ml remove 2,805,597 + Psest_2623 0.27 +1.3 2,805,598 - Psest_2623 0.27 +0.5 2,805,598 - Psest_2623 0.27 +0.2 2,805,598 - Psest_2623 0.27 -0.4 2,805,598 - Psest_2623 0.27 -2.0 2,805,599 + Psest_2623 0.27 -0.3 2,805,747 + Psest_2623 0.38 +0.6 2,805,747 + Psest_2623 0.38 -1.3 2,805,748 - Psest_2623 0.38 -0.6 2,805,748 - Psest_2623 0.38 +0.3 2,806,008 + Psest_2623 0.58 -1.0 2,806,008 + Psest_2623 0.58 +0.2 2,806,009 - Psest_2623 0.58 +0.8 2,806,009 - Psest_2623 0.58 -2.1 2,806,016 - Psest_2623 0.58 +2.4 2,806,121 - Psest_2623 0.66 +2.4 2,806,155 + Psest_2623 0.69 +0.1 2,806,155 + Psest_2623 0.69 -1.2 2,806,155 + Psest_2623 0.69 +0.8 2,806,155 + Psest_2623 0.69 +0.1 2,806,155 + Psest_2623 0.69 -0.5 2,806,156 - Psest_2623 0.69 +1.0 2,806,156 - Psest_2623 0.69 -0.8 2,806,160 - Psest_2623 0.69 -1.0 2,806,160 - Psest_2623 0.69 -0.8 2,806,175 + Psest_2623 0.70 -0.2 2,806,175 + Psest_2623 0.70 -0.3 2,806,175 + Psest_2623 0.70 -0.2 2,806,175 + Psest_2623 0.70 -1.5 2,806,175 + Psest_2623 0.70 +0.3 2,806,175 + Psest_2623 0.70 -0.6 2,806,175 + Psest_2623 0.70 +1.2 2,806,175 + Psest_2623 0.70 -0.8 2,806,176 - Psest_2623 0.70 -1.9 2,806,176 - Psest_2623 0.70 +0.4 2,806,176 - Psest_2623 0.70 -0.1 2,806,176 - Psest_2623 0.70 +0.2 2,806,176 - Psest_2623 0.70 -0.6 2,806,176 - Psest_2623 0.70 -1.7 2,806,176 - Psest_2623 0.70 -0.2 2,806,176 - Psest_2623 0.70 -0.5 2,806,179 + Psest_2623 0.71 -0.3 2,806,179 + Psest_2623 0.71 +1.1 2,806,180 - Psest_2623 0.71 -0.0 2,806,180 - Psest_2623 0.71 +1.1 2,806,180 - Psest_2623 0.71 +0.5 2,806,370 + Psest_2623 0.85 -0.8 2,806,447 + +0.7 2,806,447 + -0.4 2,806,447 + -0.7 2,806,448 - +0.2 2,806,511 + -1.9 2,806,511 + -0.7 2,806,511 + +0.4 2,806,512 - -0.5 2,806,512 - +0.2 2,806,512 - -2.1 2,806,512 - -2.5 2,806,512 - -0.2 2,806,744 + Psest_2624 0.60 +1.4 2,806,744 + Psest_2624 0.60 -1.1 2,806,756 + Psest_2624 0.65 +1.7 2,806,796 - Psest_2624 0.80 +0.1 2,806,796 - Psest_2624 0.80 +1.7 2,806,867 + -0.9 2,806,867 + +1.5 2,806,867 + -1.0 2,806,868 - -0.6 2,806,960 + +0.1 2,806,960 + -0.3 2,806,960 + +0.7 2,806,961 - -1.5 2,806,961 - -2.6 2,806,961 - +0.7 2,806,961 - +0.5 2,807,080 + Psest_2625 0.14 +0.6 2,807,080 + Psest_2625 0.14 +0.7 2,807,080 + Psest_2625 0.14 -1.5 2,807,080 + Psest_2625 0.14 -0.9 2,807,080 + Psest_2625 0.14 -0.9 2,807,080 + Psest_2625 0.14 -1.1 2,807,080 + Psest_2625 0.14 +0.1 2,807,080 + Psest_2625 0.14 +2.2 2,807,080 + Psest_2625 0.14 +0.1 2,807,080 + Psest_2625 0.14 -0.7 2,807,080 + Psest_2625 0.14 +1.4 2,807,081 - Psest_2625 0.14 -0.1 2,807,081 - Psest_2625 0.14 -1.0 2,807,081 - Psest_2625 0.14 +0.7 2,807,081 - Psest_2625 0.14 +0.4 2,807,147 - Psest_2625 0.19 +0.5 2,807,147 - Psest_2625 0.19 +0.4 2,807,147 - Psest_2625 0.19 -0.0 2,807,147 - Psest_2625 0.19 -0.6 2,807,402 - Psest_2625 0.35 -1.1 2,807,402 - Psest_2625 0.35 -2.4 2,807,649 + Psest_2625 0.52 +2.5 2,807,649 + Psest_2625 0.52 +1.0 2,807,650 - Psest_2625 0.52 -0.1 2,807,650 - Psest_2625 0.52 -0.5 2,807,650 - Psest_2625 0.52 -0.3
Or see this region's nucleotide sequence