Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2490

Experiment: Nalidixic 0.00390625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2489 and Psest_2490 are separated by 396 nucleotidesPsest_2490 and Psest_2491 overlap by 1 nucleotides Psest_2489: Psest_2489 - branched-chain amino acid uptake carrier, at 2,661,497 to 2,662,813 _2489 Psest_2490: Psest_2490 - succinyl-CoA synthetase, alpha subunit, at 2,663,210 to 2,664,094 _2490 Psest_2491: Psest_2491 - succinyl-CoA synthetase, beta subunit, at 2,664,094 to 2,665,260 _2491 Position (kb) 2663 2664 2665Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2662.236 kb on + strand, within Psest_2489at 2662.236 kb on + strand, within Psest_2489at 2662.443 kb on + strand, within Psest_2489at 2662.444 kb on - strand, within Psest_2489at 2662.513 kb on + strand, within Psest_2489at 2662.513 kb on + strand, within Psest_2489at 2662.513 kb on + strand, within Psest_2489at 2662.513 kb on + strand, within Psest_2489at 2662.513 kb on + strand, within Psest_2489at 2662.513 kb on + strand, within Psest_2489at 2662.513 kb on + strand, within Psest_2489at 2662.513 kb on + strand, within Psest_2489at 2662.514 kb on - strand, within Psest_2489at 2662.514 kb on - strand, within Psest_2489at 2662.514 kb on - strand, within Psest_2489at 2662.549 kb on - strand, within Psest_2489at 2662.565 kb on + strand, within Psest_2489at 2662.739 kb on - strandat 2662.825 kb on + strandat 2662.825 kb on + strandat 2662.826 kb on - strandat 2662.836 kb on + strandat 2662.894 kb on + strandat 2662.894 kb on + strandat 2662.895 kb on - strandat 2663.006 kb on + strandat 2663.006 kb on + strandat 2663.006 kb on + strandat 2663.007 kb on - strandat 2663.079 kb on - strandat 2663.397 kb on + strand, within Psest_2490at 2663.397 kb on + strand, within Psest_2490at 2663.397 kb on + strand, within Psest_2490at 2663.398 kb on - strand, within Psest_2490at 2663.619 kb on + strand, within Psest_2490at 2663.620 kb on - strand, within Psest_2490at 2663.620 kb on - strand, within Psest_2490at 2663.620 kb on - strand, within Psest_2490at 2663.620 kb on - strand, within Psest_2490at 2663.666 kb on - strand, within Psest_2490at 2663.880 kb on + strand, within Psest_2490at 2663.880 kb on + strand, within Psest_2490at 2663.880 kb on + strand, within Psest_2490at 2663.880 kb on + strand, within Psest_2490at 2663.880 kb on + strand, within Psest_2490at 2663.880 kb on + strand, within Psest_2490at 2663.880 kb on + strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2664.239 kb on - strand, within Psest_2491at 2664.239 kb on - strand, within Psest_2491at 2664.239 kb on - strand, within Psest_2491at 2664.244 kb on + strand, within Psest_2491at 2664.506 kb on + strand, within Psest_2491at 2664.506 kb on + strand, within Psest_2491at 2664.506 kb on + strand, within Psest_2491at 2664.507 kb on - strand, within Psest_2491at 2664.507 kb on - strand, within Psest_2491at 2664.507 kb on - strand, within Psest_2491at 2664.507 kb on - strand, within Psest_2491at 2664.507 kb on - strand, within Psest_2491at 2664.591 kb on - strand, within Psest_2491at 2664.689 kb on + strand, within Psest_2491at 2664.690 kb on - strand, within Psest_2491at 2664.690 kb on - strand, within Psest_2491at 2664.690 kb on - strand, within Psest_2491at 2664.690 kb on - strand, within Psest_2491at 2664.935 kb on + strand, within Psest_2491at 2665.082 kb on - strand, within Psest_2491

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.00390625 mg/ml
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2,662,236 + Psest_2489 0.56 +1.2
2,662,236 + Psest_2489 0.56 +0.2
2,662,443 + Psest_2489 0.72 -1.1
2,662,444 - Psest_2489 0.72 +1.8
2,662,513 + Psest_2489 0.77 +0.0
2,662,513 + Psest_2489 0.77 +1.2
2,662,513 + Psest_2489 0.77 +1.0
2,662,513 + Psest_2489 0.77 +2.4
2,662,513 + Psest_2489 0.77 +1.1
2,662,513 + Psest_2489 0.77 +0.1
2,662,513 + Psest_2489 0.77 +0.4
2,662,513 + Psest_2489 0.77 +0.1
2,662,514 - Psest_2489 0.77 -1.6
2,662,514 - Psest_2489 0.77 -1.0
2,662,514 - Psest_2489 0.77 -1.6
2,662,549 - Psest_2489 0.80 +0.5
2,662,565 + Psest_2489 0.81 -1.8
2,662,739 - +1.4
2,662,825 + -0.1
2,662,825 + +0.4
2,662,826 - -0.9
2,662,836 + +0.4
2,662,894 + +0.1
2,662,894 + +0.7
2,662,895 - +0.1
2,663,006 + +2.4
2,663,006 + -2.0
2,663,006 + +1.5
2,663,007 - +0.9
2,663,079 - +0.2
2,663,397 + Psest_2490 0.21 +1.4
2,663,397 + Psest_2490 0.21 +1.1
2,663,397 + Psest_2490 0.21 +1.6
2,663,398 - Psest_2490 0.21 +1.1
2,663,619 + Psest_2490 0.46 +0.0
2,663,620 - Psest_2490 0.46 +1.2
2,663,620 - Psest_2490 0.46 +0.3
2,663,620 - Psest_2490 0.46 +3.4
2,663,620 - Psest_2490 0.46 +1.7
2,663,666 - Psest_2490 0.52 +0.6
2,663,880 + Psest_2490 0.76 +0.4
2,663,880 + Psest_2490 0.76 +0.1
2,663,880 + Psest_2490 0.76 +0.6
2,663,880 + Psest_2490 0.76 -1.8
2,663,880 + Psest_2490 0.76 +0.6
2,663,880 + Psest_2490 0.76 +3.2
2,663,880 + Psest_2490 0.76 +0.4
2,663,881 - Psest_2490 0.76 +1.1
2,663,881 - Psest_2490 0.76 -0.3
2,663,881 - Psest_2490 0.76 +0.1
2,663,881 - Psest_2490 0.76 +0.1
2,663,881 - Psest_2490 0.76 -0.1
2,663,881 - Psest_2490 0.76 -0.9
2,663,881 - Psest_2490 0.76 +1.5
2,663,881 - Psest_2490 0.76 +1.3
2,663,881 - Psest_2490 0.76 -1.0
2,663,881 - Psest_2490 0.76 +1.4
2,663,881 - Psest_2490 0.76 -1.0
2,663,881 - Psest_2490 0.76 -0.4
2,663,881 - Psest_2490 0.76 +1.1
2,663,881 - Psest_2490 0.76 +0.8
2,663,881 - Psest_2490 0.76 +0.5
2,663,881 - Psest_2490 0.76 -1.7
2,663,881 - Psest_2490 0.76 -0.6
2,663,881 - Psest_2490 0.76 +1.1
2,663,881 - Psest_2490 0.76 +2.5
2,663,881 - Psest_2490 0.76 +2.1
2,663,881 - Psest_2490 0.76 +0.2
2,663,881 - Psest_2490 0.76 +0.5
2,663,881 - Psest_2490 0.76 -2.0
2,663,881 - Psest_2490 0.76 +2.6
2,663,881 - Psest_2490 0.76 +1.2
2,663,881 - Psest_2490 0.76 +1.8
2,663,881 - Psest_2490 0.76 +2.2
2,664,239 - Psest_2491 0.12 +0.5
2,664,239 - Psest_2491 0.12 -1.8
2,664,239 - Psest_2491 0.12 -0.3
2,664,244 + Psest_2491 0.13 +2.4
2,664,506 + Psest_2491 0.35 +0.6
2,664,506 + Psest_2491 0.35 +0.0
2,664,506 + Psest_2491 0.35 +0.3
2,664,507 - Psest_2491 0.35 +0.9
2,664,507 - Psest_2491 0.35 -0.1
2,664,507 - Psest_2491 0.35 -1.1
2,664,507 - Psest_2491 0.35 +1.1
2,664,507 - Psest_2491 0.35 +2.3
2,664,591 - Psest_2491 0.43 +1.1
2,664,689 + Psest_2491 0.51 +1.0
2,664,690 - Psest_2491 0.51 -0.4
2,664,690 - Psest_2491 0.51 +1.5
2,664,690 - Psest_2491 0.51 -1.4
2,664,690 - Psest_2491 0.51 -0.5
2,664,935 + Psest_2491 0.72 +1.0
2,665,082 - Psest_2491 0.85 -0.0

Or see this region's nucleotide sequence