Experiment: Nalidixic 0.00390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2489 and Psest_2490 are separated by 396 nucleotides Psest_2490 and Psest_2491 overlap by 1 nucleotides
Psest_2489: Psest_2489 - branched-chain amino acid uptake carrier, at 2,661,497 to 2,662,813
_2489
Psest_2490: Psest_2490 - succinyl-CoA synthetase, alpha subunit, at 2,663,210 to 2,664,094
_2490
Psest_2491: Psest_2491 - succinyl-CoA synthetase, beta subunit, at 2,664,094 to 2,665,260
_2491
Position (kb)
2663
2664
2665 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2662.236 kb on + strand, within Psest_2489 at 2662.236 kb on + strand, within Psest_2489 at 2662.443 kb on + strand, within Psest_2489 at 2662.444 kb on - strand, within Psest_2489 at 2662.513 kb on + strand, within Psest_2489 at 2662.513 kb on + strand, within Psest_2489 at 2662.513 kb on + strand, within Psest_2489 at 2662.513 kb on + strand, within Psest_2489 at 2662.513 kb on + strand, within Psest_2489 at 2662.513 kb on + strand, within Psest_2489 at 2662.513 kb on + strand, within Psest_2489 at 2662.513 kb on + strand, within Psest_2489 at 2662.514 kb on - strand, within Psest_2489 at 2662.514 kb on - strand, within Psest_2489 at 2662.514 kb on - strand, within Psest_2489 at 2662.549 kb on - strand, within Psest_2489 at 2662.565 kb on + strand, within Psest_2489 at 2662.739 kb on - strand at 2662.825 kb on + strand at 2662.825 kb on + strand at 2662.826 kb on - strand at 2662.836 kb on + strand at 2662.894 kb on + strand at 2662.894 kb on + strand at 2662.895 kb on - strand at 2663.006 kb on + strand at 2663.006 kb on + strand at 2663.006 kb on + strand at 2663.007 kb on - strand at 2663.079 kb on - strand at 2663.397 kb on + strand, within Psest_2490 at 2663.397 kb on + strand, within Psest_2490 at 2663.397 kb on + strand, within Psest_2490 at 2663.398 kb on - strand, within Psest_2490 at 2663.619 kb on + strand, within Psest_2490 at 2663.620 kb on - strand, within Psest_2490 at 2663.620 kb on - strand, within Psest_2490 at 2663.620 kb on - strand, within Psest_2490 at 2663.620 kb on - strand, within Psest_2490 at 2663.666 kb on - strand, within Psest_2490 at 2663.880 kb on + strand, within Psest_2490 at 2663.880 kb on + strand, within Psest_2490 at 2663.880 kb on + strand, within Psest_2490 at 2663.880 kb on + strand, within Psest_2490 at 2663.880 kb on + strand, within Psest_2490 at 2663.880 kb on + strand, within Psest_2490 at 2663.880 kb on + strand, within Psest_2490 at 2663.881 kb on - strand, within Psest_2490 at 2663.881 kb on - strand, within Psest_2490 at 2663.881 kb on - strand, within Psest_2490 at 2663.881 kb on - strand, within Psest_2490 at 2663.881 kb on - strand, within Psest_2490 at 2663.881 kb on - strand, within Psest_2490 at 2663.881 kb on - strand, within Psest_2490 at 2663.881 kb on - strand, within Psest_2490 at 2663.881 kb on - strand, within Psest_2490 at 2663.881 kb on - strand, within Psest_2490 at 2663.881 kb on - strand, within Psest_2490 at 2663.881 kb on - strand, within Psest_2490 at 2663.881 kb on - strand, within Psest_2490 at 2663.881 kb on - strand, within Psest_2490 at 2663.881 kb on - strand, within Psest_2490 at 2663.881 kb on - strand, within Psest_2490 at 2663.881 kb on - strand, within Psest_2490 at 2663.881 kb on - strand, within Psest_2490 at 2663.881 kb on - strand, within Psest_2490 at 2663.881 kb on - strand, within Psest_2490 at 2663.881 kb on - strand, within Psest_2490 at 2663.881 kb on - strand, within Psest_2490 at 2663.881 kb on - strand, within Psest_2490 at 2663.881 kb on - strand, within Psest_2490 at 2663.881 kb on - strand, within Psest_2490 at 2663.881 kb on - strand, within Psest_2490 at 2663.881 kb on - strand, within Psest_2490 at 2664.239 kb on - strand, within Psest_2491 at 2664.239 kb on - strand, within Psest_2491 at 2664.239 kb on - strand, within Psest_2491 at 2664.244 kb on + strand, within Psest_2491 at 2664.506 kb on + strand, within Psest_2491 at 2664.506 kb on + strand, within Psest_2491 at 2664.506 kb on + strand, within Psest_2491 at 2664.507 kb on - strand, within Psest_2491 at 2664.507 kb on - strand, within Psest_2491 at 2664.507 kb on - strand, within Psest_2491 at 2664.507 kb on - strand, within Psest_2491 at 2664.507 kb on - strand, within Psest_2491 at 2664.591 kb on - strand, within Psest_2491 at 2664.689 kb on + strand, within Psest_2491 at 2664.690 kb on - strand, within Psest_2491 at 2664.690 kb on - strand, within Psest_2491 at 2664.690 kb on - strand, within Psest_2491 at 2664.690 kb on - strand, within Psest_2491 at 2664.935 kb on + strand, within Psest_2491 at 2665.082 kb on - strand, within Psest_2491
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.00390625 mg/ml remove 2,662,236 + Psest_2489 0.56 +1.2 2,662,236 + Psest_2489 0.56 +0.2 2,662,443 + Psest_2489 0.72 -1.1 2,662,444 - Psest_2489 0.72 +1.8 2,662,513 + Psest_2489 0.77 +0.0 2,662,513 + Psest_2489 0.77 +1.2 2,662,513 + Psest_2489 0.77 +1.0 2,662,513 + Psest_2489 0.77 +2.4 2,662,513 + Psest_2489 0.77 +1.1 2,662,513 + Psest_2489 0.77 +0.1 2,662,513 + Psest_2489 0.77 +0.4 2,662,513 + Psest_2489 0.77 +0.1 2,662,514 - Psest_2489 0.77 -1.6 2,662,514 - Psest_2489 0.77 -1.0 2,662,514 - Psest_2489 0.77 -1.6 2,662,549 - Psest_2489 0.80 +0.5 2,662,565 + Psest_2489 0.81 -1.8 2,662,739 - +1.4 2,662,825 + -0.1 2,662,825 + +0.4 2,662,826 - -0.9 2,662,836 + +0.4 2,662,894 + +0.1 2,662,894 + +0.7 2,662,895 - +0.1 2,663,006 + +2.4 2,663,006 + -2.0 2,663,006 + +1.5 2,663,007 - +0.9 2,663,079 - +0.2 2,663,397 + Psest_2490 0.21 +1.4 2,663,397 + Psest_2490 0.21 +1.1 2,663,397 + Psest_2490 0.21 +1.6 2,663,398 - Psest_2490 0.21 +1.1 2,663,619 + Psest_2490 0.46 +0.0 2,663,620 - Psest_2490 0.46 +1.2 2,663,620 - Psest_2490 0.46 +0.3 2,663,620 - Psest_2490 0.46 +3.4 2,663,620 - Psest_2490 0.46 +1.7 2,663,666 - Psest_2490 0.52 +0.6 2,663,880 + Psest_2490 0.76 +0.4 2,663,880 + Psest_2490 0.76 +0.1 2,663,880 + Psest_2490 0.76 +0.6 2,663,880 + Psest_2490 0.76 -1.8 2,663,880 + Psest_2490 0.76 +0.6 2,663,880 + Psest_2490 0.76 +3.2 2,663,880 + Psest_2490 0.76 +0.4 2,663,881 - Psest_2490 0.76 +1.1 2,663,881 - Psest_2490 0.76 -0.3 2,663,881 - Psest_2490 0.76 +0.1 2,663,881 - Psest_2490 0.76 +0.1 2,663,881 - Psest_2490 0.76 -0.1 2,663,881 - Psest_2490 0.76 -0.9 2,663,881 - Psest_2490 0.76 +1.5 2,663,881 - Psest_2490 0.76 +1.3 2,663,881 - Psest_2490 0.76 -1.0 2,663,881 - Psest_2490 0.76 +1.4 2,663,881 - Psest_2490 0.76 -1.0 2,663,881 - Psest_2490 0.76 -0.4 2,663,881 - Psest_2490 0.76 +1.1 2,663,881 - Psest_2490 0.76 +0.8 2,663,881 - Psest_2490 0.76 +0.5 2,663,881 - Psest_2490 0.76 -1.7 2,663,881 - Psest_2490 0.76 -0.6 2,663,881 - Psest_2490 0.76 +1.1 2,663,881 - Psest_2490 0.76 +2.5 2,663,881 - Psest_2490 0.76 +2.1 2,663,881 - Psest_2490 0.76 +0.2 2,663,881 - Psest_2490 0.76 +0.5 2,663,881 - Psest_2490 0.76 -2.0 2,663,881 - Psest_2490 0.76 +2.6 2,663,881 - Psest_2490 0.76 +1.2 2,663,881 - Psest_2490 0.76 +1.8 2,663,881 - Psest_2490 0.76 +2.2 2,664,239 - Psest_2491 0.12 +0.5 2,664,239 - Psest_2491 0.12 -1.8 2,664,239 - Psest_2491 0.12 -0.3 2,664,244 + Psest_2491 0.13 +2.4 2,664,506 + Psest_2491 0.35 +0.6 2,664,506 + Psest_2491 0.35 +0.0 2,664,506 + Psest_2491 0.35 +0.3 2,664,507 - Psest_2491 0.35 +0.9 2,664,507 - Psest_2491 0.35 -0.1 2,664,507 - Psest_2491 0.35 -1.1 2,664,507 - Psest_2491 0.35 +1.1 2,664,507 - Psest_2491 0.35 +2.3 2,664,591 - Psest_2491 0.43 +1.1 2,664,689 + Psest_2491 0.51 +1.0 2,664,690 - Psest_2491 0.51 -0.4 2,664,690 - Psest_2491 0.51 +1.5 2,664,690 - Psest_2491 0.51 -1.4 2,664,690 - Psest_2491 0.51 -0.5 2,664,935 + Psest_2491 0.72 +1.0 2,665,082 - Psest_2491 0.85 -0.0
Or see this region's nucleotide sequence