Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2344
Experiment: Nalidixic 0.00390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Nalidixic 0.00390625 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,497,843 | + | Psest_2343 | 0.62 | -0.1 | |
2,497,844 | - | Psest_2343 | 0.62 | +1.3 | |
2,497,844 | - | Psest_2343 | 0.62 | +0.6 | |
2,497,850 | - | Psest_2343 | 0.63 | -0.5 | |
2,497,976 | - | Psest_2343 | 0.79 | -0.4 | |
2,498,032 | + | Psest_2343 | 0.86 | +1.5 | |
2,498,033 | - | Psest_2343 | 0.86 | +0.1 | |
2,498,237 | + | -1.4 | |||
2,498,239 | + | +1.3 | |||
2,498,239 | + | -0.2 | |||
2,498,239 | + | -0.7 | |||
2,498,239 | + | -0.3 | |||
2,498,240 | - | +0.4 | |||
2,498,240 | - | -1.4 | |||
2,498,240 | - | -1.7 | |||
2,498,240 | - | -0.3 | |||
2,498,240 | - | +1.7 | |||
2,498,288 | + | +0.8 | |||
2,498,345 | + | -1.9 | |||
2,498,739 | + | Psest_2344 | 0.33 | +0.6 | |
2,498,752 | + | Psest_2344 | 0.34 | +2.9 | |
2,498,753 | - | Psest_2344 | 0.34 | +1.2 | |
2,498,753 | - | Psest_2344 | 0.34 | -0.1 | |
2,498,968 | + | Psest_2344 | 0.49 | +1.0 | |
2,499,236 | - | Psest_2344 | 0.67 | +1.2 | |
2,499,629 | - | +1.2 | |||
2,499,923 | + | +0.5 | |||
2,499,931 | + | +0.8 | |||
2,500,198 | + | Psest_2346 | 0.14 | +1.9 | |
2,500,227 | + | Psest_2346 | 0.18 | +1.2 | |
2,500,350 | + | Psest_2346 | 0.31 | +1.0 | |
2,500,426 | + | Psest_2346 | 0.40 | -2.5 | |
2,500,426 | + | Psest_2346 | 0.40 | -1.1 | |
2,500,427 | - | Psest_2346 | 0.40 | +1.1 | |
2,500,427 | - | Psest_2346 | 0.40 | -0.4 |
Or see this region's nucleotide sequence