Experiment: Nalidixic 0.00390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2281 and Psest_2282 overlap by 8 nucleotides Psest_2282 and Psest_2283 are separated by 102 nucleotides Psest_2283 and Psest_2284 are separated by 205 nucleotides Psest_2284 and Psest_2285 are separated by 130 nucleotides
Psest_2281: Psest_2281 - Phosphoserine aminotransferase, at 2,429,259 to 2,430,359
_2281
Psest_2282: Psest_2282 - Dihydroorotate dehydrogenase, at 2,430,352 to 2,431,197
_2282
Psest_2283: Psest_2283 - Parvulin-like peptidyl-prolyl isomerase, at 2,431,300 to 2,433,156
_2283
Psest_2284: Psest_2284 - Bacterial nucleoid DNA-binding protein, at 2,433,362 to 2,433,634
_2284
Psest_2285: Psest_2285 - ATP-dependent protease La, at 2,433,765 to 2,436,161
_2285
Position (kb)
2431
2432
2433
2434 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2430.347 kb on + strand at 2430.348 kb on - strand at 2430.357 kb on + strand at 2430.358 kb on - strand at 2430.479 kb on + strand, within Psest_2282 at 2430.479 kb on + strand, within Psest_2282 at 2430.722 kb on - strand, within Psest_2282 at 2430.866 kb on + strand, within Psest_2282 at 2430.939 kb on - strand, within Psest_2282 at 2433.364 kb on - strand at 2433.364 kb on - strand at 2433.364 kb on - strand at 2433.683 kb on - strand at 2433.683 kb on - strand at 2433.698 kb on - strand at 2433.706 kb on - strand at 2433.767 kb on - strand at 2433.860 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.00390625 mg/ml remove 2,430,347 + -0.4 2,430,348 - +1.0 2,430,357 + -1.1 2,430,358 - -0.3 2,430,479 + Psest_2282 0.15 -1.0 2,430,479 + Psest_2282 0.15 +1.1 2,430,722 - Psest_2282 0.44 -1.1 2,430,866 + Psest_2282 0.61 -0.5 2,430,939 - Psest_2282 0.69 -2.3 2,433,364 - +2.2 2,433,364 - +1.5 2,433,364 - +0.6 2,433,683 - -0.2 2,433,683 - +1.9 2,433,698 - -0.6 2,433,706 - +1.3 2,433,767 - -0.0 2,433,860 - +0.5
Or see this region's nucleotide sequence