Experiment: Nalidixic 0.00390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2184 and Psest_2185 overlap by 4 nucleotides Psest_2185 and Psest_2186 are separated by 3 nucleotides Psest_2186 and Psest_2187 overlap by 4 nucleotides
Psest_2184: Psest_2184 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 2,340,992 to 2,342,464
_2184
Psest_2185: Psest_2185 - RND family efflux transporter, MFP subunit, at 2,342,461 to 2,343,360
_2185
Psest_2186: Psest_2186 - Protein of unknown function (DUF1656)., at 2,343,364 to 2,343,567
_2186
Psest_2187: Psest_2187 - Predicted membrane protein, at 2,343,564 to 2,345,624
_2187
Position (kb)
2343
2344 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2342.388 kb on + strand at 2342.389 kb on - strand at 2342.448 kb on + strand at 2342.448 kb on + strand at 2342.777 kb on + strand, within Psest_2185 at 2342.840 kb on + strand, within Psest_2185 at 2343.266 kb on + strand, within Psest_2185 at 2343.266 kb on + strand, within Psest_2185 at 2343.266 kb on + strand, within Psest_2185 at 2343.266 kb on + strand, within Psest_2185 at 2343.266 kb on + strand, within Psest_2185 at 2343.266 kb on + strand, within Psest_2185 at 2343.267 kb on - strand, within Psest_2185 at 2343.267 kb on - strand, within Psest_2185 at 2343.267 kb on - strand, within Psest_2185 at 2343.267 kb on - strand, within Psest_2185 at 2343.267 kb on - strand, within Psest_2185 at 2343.267 kb on - strand, within Psest_2185 at 2343.267 kb on - strand, within Psest_2185 at 2343.269 kb on + strand, within Psest_2185 at 2343.269 kb on + strand, within Psest_2185 at 2343.270 kb on - strand, within Psest_2185 at 2343.270 kb on - strand, within Psest_2185 at 2343.283 kb on + strand at 2343.283 kb on + strand at 2343.283 kb on + strand at 2343.284 kb on - strand at 2343.410 kb on + strand, within Psest_2186 at 2343.410 kb on + strand, within Psest_2186 at 2343.410 kb on + strand, within Psest_2186 at 2343.410 kb on + strand, within Psest_2186 at 2343.410 kb on + strand, within Psest_2186 at 2343.410 kb on + strand, within Psest_2186 at 2343.411 kb on - strand, within Psest_2186 at 2343.411 kb on - strand, within Psest_2186 at 2343.411 kb on - strand, within Psest_2186 at 2343.411 kb on - strand, within Psest_2186 at 2343.452 kb on + strand, within Psest_2186 at 2343.536 kb on + strand, within Psest_2186 at 2343.536 kb on + strand, within Psest_2186 at 2343.536 kb on + strand, within Psest_2186 at 2343.537 kb on - strand, within Psest_2186 at 2343.537 kb on - strand, within Psest_2186 at 2343.545 kb on + strand, within Psest_2186 at 2343.545 kb on + strand, within Psest_2186 at 2343.546 kb on - strand, within Psest_2186 at 2344.184 kb on - strand, within Psest_2187 at 2344.348 kb on + strand, within Psest_2187 at 2344.466 kb on + strand, within Psest_2187 at 2344.468 kb on + strand, within Psest_2187 at 2344.559 kb on - strand, within Psest_2187 at 2344.565 kb on - strand, within Psest_2187 at 2344.565 kb on - strand, within Psest_2187 at 2344.565 kb on - strand, within Psest_2187
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.00390625 mg/ml remove 2,342,388 + +1.4 2,342,389 - -0.8 2,342,448 + -0.8 2,342,448 + -1.4 2,342,777 + Psest_2185 0.35 +1.2 2,342,840 + Psest_2185 0.42 -1.9 2,343,266 + Psest_2185 0.89 +1.5 2,343,266 + Psest_2185 0.89 -0.3 2,343,266 + Psest_2185 0.89 -1.1 2,343,266 + Psest_2185 0.89 +1.3 2,343,266 + Psest_2185 0.89 -0.4 2,343,266 + Psest_2185 0.89 -0.1 2,343,267 - Psest_2185 0.90 +0.7 2,343,267 - Psest_2185 0.90 -0.3 2,343,267 - Psest_2185 0.90 -1.6 2,343,267 - Psest_2185 0.90 -0.5 2,343,267 - Psest_2185 0.90 -0.2 2,343,267 - Psest_2185 0.90 +2.2 2,343,267 - Psest_2185 0.90 +0.7 2,343,269 + Psest_2185 0.90 +2.2 2,343,269 + Psest_2185 0.90 -0.8 2,343,270 - Psest_2185 0.90 -1.4 2,343,270 - Psest_2185 0.90 +1.4 2,343,283 + +0.1 2,343,283 + +0.2 2,343,283 + -0.4 2,343,284 - +2.0 2,343,410 + Psest_2186 0.23 +1.2 2,343,410 + Psest_2186 0.23 -0.6 2,343,410 + Psest_2186 0.23 -0.5 2,343,410 + Psest_2186 0.23 +1.3 2,343,410 + Psest_2186 0.23 +0.4 2,343,410 + Psest_2186 0.23 +1.3 2,343,411 - Psest_2186 0.23 -1.8 2,343,411 - Psest_2186 0.23 +0.9 2,343,411 - Psest_2186 0.23 +0.6 2,343,411 - Psest_2186 0.23 +0.5 2,343,452 + Psest_2186 0.43 -0.4 2,343,536 + Psest_2186 0.84 -0.3 2,343,536 + Psest_2186 0.84 -0.2 2,343,536 + Psest_2186 0.84 +0.5 2,343,537 - Psest_2186 0.85 -0.5 2,343,537 - Psest_2186 0.85 +0.9 2,343,545 + Psest_2186 0.89 -0.9 2,343,545 + Psest_2186 0.89 -2.2 2,343,546 - Psest_2186 0.89 +2.6 2,344,184 - Psest_2187 0.30 +0.3 2,344,348 + Psest_2187 0.38 -1.0 2,344,466 + Psest_2187 0.44 +1.2 2,344,468 + Psest_2187 0.44 -0.1 2,344,559 - Psest_2187 0.48 +0.5 2,344,565 - Psest_2187 0.49 -0.2 2,344,565 - Psest_2187 0.49 -0.4 2,344,565 - Psest_2187 0.49 +0.2
Or see this region's nucleotide sequence