Experiment: Nalidixic 0.00390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1339 and Psest_1340 are separated by 38 nucleotides Psest_1340 and Psest_1341 are separated by 37 nucleotides Psest_1341 and Psest_1342 are separated by 60 nucleotides
Psest_1339: Psest_1339 - ATP-dependent helicase HrpA, at 1,446,570 to 1,450,652
_1339
Psest_1340: Psest_1340 - rarD protein, at 1,450,691 to 1,451,620
_1340
Psest_1341: Psest_1341 - FOG: FHA domain, at 1,451,658 to 1,452,512
_1341
Psest_1342: Psest_1342 - Protein kinase domain., at 1,452,573 to 1,454,126
_1342
Position (kb)
1450
1451
1452 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1450.374 kb on + strand at 1450.540 kb on - strand at 1450.561 kb on - strand at 1450.622 kb on - strand at 1450.760 kb on + strand at 1450.760 kb on + strand at 1450.760 kb on + strand at 1450.761 kb on - strand at 1450.761 kb on - strand at 1450.761 kb on - strand at 1450.761 kb on - strand at 1450.761 kb on - strand at 1450.761 kb on - strand at 1450.763 kb on + strand at 1450.763 kb on + strand at 1450.763 kb on + strand at 1450.763 kb on + strand at 1450.763 kb on + strand at 1450.763 kb on + strand at 1450.763 kb on + strand at 1450.764 kb on - strand at 1450.764 kb on - strand at 1450.764 kb on - strand at 1450.764 kb on - strand at 1450.766 kb on + strand at 1450.766 kb on + strand at 1450.766 kb on + strand at 1450.766 kb on + strand at 1450.766 kb on + strand at 1450.766 kb on + strand at 1450.766 kb on + strand at 1450.766 kb on + strand at 1450.767 kb on - strand at 1450.767 kb on - strand at 1450.767 kb on - strand at 1450.806 kb on - strand, within Psest_1340 at 1451.043 kb on + strand, within Psest_1340 at 1451.043 kb on + strand, within Psest_1340 at 1451.192 kb on + strand, within Psest_1340 at 1451.193 kb on - strand, within Psest_1340 at 1451.193 kb on - strand, within Psest_1340 at 1451.435 kb on + strand, within Psest_1340 at 1451.435 kb on + strand, within Psest_1340 at 1451.435 kb on + strand, within Psest_1340 at 1451.436 kb on - strand, within Psest_1340 at 1451.436 kb on - strand, within Psest_1340 at 1451.436 kb on - strand, within Psest_1340 at 1451.436 kb on - strand, within Psest_1340 at 1451.510 kb on + strand, within Psest_1340 at 1451.510 kb on + strand, within Psest_1340 at 1451.510 kb on + strand, within Psest_1340 at 1451.510 kb on + strand, within Psest_1340 at 1451.510 kb on + strand, within Psest_1340 at 1451.510 kb on + strand, within Psest_1340 at 1451.510 kb on + strand, within Psest_1340 at 1451.510 kb on + strand, within Psest_1340 at 1451.510 kb on + strand, within Psest_1340 at 1451.510 kb on + strand, within Psest_1340 at 1451.511 kb on - strand, within Psest_1340 at 1451.511 kb on - strand, within Psest_1340 at 1451.511 kb on - strand, within Psest_1340 at 1451.511 kb on - strand, within Psest_1340 at 1451.511 kb on - strand, within Psest_1340 at 1451.952 kb on + strand, within Psest_1341 at 1451.952 kb on + strand, within Psest_1341 at 1451.952 kb on + strand, within Psest_1341 at 1451.952 kb on + strand, within Psest_1341 at 1451.953 kb on - strand, within Psest_1341 at 1451.953 kb on - strand, within Psest_1341 at 1452.058 kb on + strand, within Psest_1341 at 1452.059 kb on - strand, within Psest_1341 at 1452.059 kb on - strand, within Psest_1341 at 1452.059 kb on - strand, within Psest_1341 at 1452.059 kb on - strand, within Psest_1341 at 1452.059 kb on - strand, within Psest_1341 at 1452.059 kb on - strand, within Psest_1341 at 1452.059 kb on - strand, within Psest_1341 at 1452.059 kb on - strand, within Psest_1341 at 1452.151 kb on + strand, within Psest_1341 at 1452.151 kb on + strand, within Psest_1341 at 1452.151 kb on + strand, within Psest_1341 at 1452.152 kb on - strand, within Psest_1341 at 1452.152 kb on - strand, within Psest_1341 at 1452.322 kb on + strand, within Psest_1341 at 1452.322 kb on + strand, within Psest_1341 at 1452.323 kb on - strand, within Psest_1341 at 1452.323 kb on - strand, within Psest_1341 at 1452.323 kb on - strand, within Psest_1341 at 1452.323 kb on - strand, within Psest_1341 at 1452.323 kb on - strand, within Psest_1341 at 1452.355 kb on + strand, within Psest_1341 at 1452.356 kb on - strand, within Psest_1341 at 1452.356 kb on - strand, within Psest_1341 at 1452.358 kb on + strand, within Psest_1341 at 1452.359 kb on - strand, within Psest_1341 at 1452.359 kb on - strand, within Psest_1341 at 1452.521 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.00390625 mg/ml remove 1,450,374 + -0.1 1,450,540 - +0.3 1,450,561 - -0.5 1,450,622 - -0.4 1,450,760 + +0.7 1,450,760 + +1.5 1,450,760 + +1.4 1,450,761 - +0.8 1,450,761 - +2.1 1,450,761 - +0.2 1,450,761 - +0.9 1,450,761 - +1.7 1,450,761 - -0.8 1,450,763 + +1.0 1,450,763 + -1.7 1,450,763 + +0.3 1,450,763 + -0.7 1,450,763 + +0.0 1,450,763 + +1.1 1,450,763 + +1.3 1,450,764 - -2.4 1,450,764 - +2.3 1,450,764 - +0.4 1,450,764 - -2.7 1,450,766 + -1.6 1,450,766 + -0.9 1,450,766 + -0.9 1,450,766 + -1.1 1,450,766 + -0.6 1,450,766 + -0.4 1,450,766 + +1.0 1,450,766 + +0.7 1,450,767 - -0.9 1,450,767 - +0.2 1,450,767 - +0.6 1,450,806 - Psest_1340 0.12 -0.9 1,451,043 + Psest_1340 0.38 +0.1 1,451,043 + Psest_1340 0.38 -0.6 1,451,192 + Psest_1340 0.54 -1.5 1,451,193 - Psest_1340 0.54 +1.8 1,451,193 - Psest_1340 0.54 -0.2 1,451,435 + Psest_1340 0.80 +0.8 1,451,435 + Psest_1340 0.80 -0.7 1,451,435 + Psest_1340 0.80 +0.7 1,451,436 - Psest_1340 0.80 -1.1 1,451,436 - Psest_1340 0.80 +0.2 1,451,436 - Psest_1340 0.80 +0.5 1,451,436 - Psest_1340 0.80 -0.4 1,451,510 + Psest_1340 0.88 -1.2 1,451,510 + Psest_1340 0.88 +0.3 1,451,510 + Psest_1340 0.88 +1.7 1,451,510 + Psest_1340 0.88 -0.5 1,451,510 + Psest_1340 0.88 +1.0 1,451,510 + Psest_1340 0.88 +1.9 1,451,510 + Psest_1340 0.88 +0.2 1,451,510 + Psest_1340 0.88 -0.7 1,451,510 + Psest_1340 0.88 -1.0 1,451,510 + Psest_1340 0.88 -2.2 1,451,511 - Psest_1340 0.88 -1.3 1,451,511 - Psest_1340 0.88 +1.3 1,451,511 - Psest_1340 0.88 +1.4 1,451,511 - Psest_1340 0.88 +0.9 1,451,511 - Psest_1340 0.88 -0.9 1,451,952 + Psest_1341 0.34 -0.5 1,451,952 + Psest_1341 0.34 -0.0 1,451,952 + Psest_1341 0.34 -1.8 1,451,952 + Psest_1341 0.34 -1.7 1,451,953 - Psest_1341 0.35 +0.7 1,451,953 - Psest_1341 0.35 +0.4 1,452,058 + Psest_1341 0.47 -0.3 1,452,059 - Psest_1341 0.47 -0.8 1,452,059 - Psest_1341 0.47 +0.9 1,452,059 - Psest_1341 0.47 +0.1 1,452,059 - Psest_1341 0.47 -2.6 1,452,059 - Psest_1341 0.47 +0.7 1,452,059 - Psest_1341 0.47 -0.3 1,452,059 - Psest_1341 0.47 +2.0 1,452,059 - Psest_1341 0.47 -1.5 1,452,151 + Psest_1341 0.58 +0.4 1,452,151 + Psest_1341 0.58 +1.5 1,452,151 + Psest_1341 0.58 -1.0 1,452,152 - Psest_1341 0.58 -0.1 1,452,152 - Psest_1341 0.58 -0.1 1,452,322 + Psest_1341 0.78 -0.1 1,452,322 + Psest_1341 0.78 -0.2 1,452,323 - Psest_1341 0.78 +2.5 1,452,323 - Psest_1341 0.78 +1.9 1,452,323 - Psest_1341 0.78 +0.2 1,452,323 - Psest_1341 0.78 +0.0 1,452,323 - Psest_1341 0.78 -0.1 1,452,355 + Psest_1341 0.82 +1.0 1,452,356 - Psest_1341 0.82 -1.6 1,452,356 - Psest_1341 0.82 +0.6 1,452,358 + Psest_1341 0.82 -1.0 1,452,359 - Psest_1341 0.82 +1.4 1,452,359 - Psest_1341 0.82 +3.9 1,452,521 + -0.4
Or see this region's nucleotide sequence