Experiment: Spectinomycin 0.00625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0893 and Psest_0895 are separated by 568 nucleotides Psest_0895 and Psest_0897 are separated by 668 nucleotides
Psest_0893: Psest_0893 - Transcriptional regulator, at 969,263 to 970,177
_0893
Psest_0895: Psest_0895 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 970,746 to 971,885
_0895
Psest_0897: Psest_0897 - VRR-NUC domain., at 972,554 to 974,193
_0897
Position (kb) 970
971
972 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 969.753 kb on - strand, within Psest_0893 at 969.753 kb on - strand, within Psest_0893 at 969.796 kb on + strand, within Psest_0893 at 969.796 kb on + strand, within Psest_0893 at 969.796 kb on + strand, within Psest_0893 at 969.797 kb on - strand, within Psest_0893 at 969.797 kb on - strand, within Psest_0893 at 969.813 kb on + strand, within Psest_0893 at 969.817 kb on + strand, within Psest_0893 at 969.817 kb on + strand, within Psest_0893 at 969.817 kb on + strand, within Psest_0893 at 969.817 kb on + strand, within Psest_0893 at 969.817 kb on + strand, within Psest_0893 at 969.817 kb on + strand, within Psest_0893 at 969.817 kb on + strand, within Psest_0893 at 969.817 kb on + strand, within Psest_0893 at 969.818 kb on - strand, within Psest_0893 at 969.818 kb on - strand, within Psest_0893 at 969.873 kb on + strand, within Psest_0893 at 969.874 kb on - strand, within Psest_0893 at 969.874 kb on - strand, within Psest_0893 at 969.916 kb on + strand, within Psest_0893 at 969.916 kb on + strand, within Psest_0893 at 969.916 kb on + strand, within Psest_0893 at 970.068 kb on + strand, within Psest_0893 at 970.068 kb on + strand, within Psest_0893 at 970.068 kb on + strand, within Psest_0893 at 970.068 kb on + strand, within Psest_0893 at 970.068 kb on + strand, within Psest_0893 at 970.068 kb on + strand, within Psest_0893 at 970.069 kb on - strand, within Psest_0893 at 970.069 kb on - strand, within Psest_0893 at 970.069 kb on - strand, within Psest_0893 at 970.070 kb on + strand, within Psest_0893 at 970.070 kb on + strand, within Psest_0893 at 970.070 kb on + strand, within Psest_0893 at 970.070 kb on + strand, within Psest_0893 at 970.070 kb on + strand, within Psest_0893 at 970.070 kb on + strand, within Psest_0893 at 970.070 kb on + strand, within Psest_0893 at 970.070 kb on + strand, within Psest_0893 at 970.071 kb on - strand, within Psest_0893 at 970.071 kb on - strand, within Psest_0893 at 970.071 kb on - strand, within Psest_0893 at 970.116 kb on - strand at 970.116 kb on - strand at 970.126 kb on + strand at 970.127 kb on - strand at 970.127 kb on - strand at 970.127 kb on - strand at 970.152 kb on + strand at 970.152 kb on + strand at 970.152 kb on + strand at 970.153 kb on - strand at 970.153 kb on - strand at 970.175 kb on + strand at 970.175 kb on + strand at 970.175 kb on + strand at 970.175 kb on + strand at 970.175 kb on + strand at 970.176 kb on - strand at 970.176 kb on - strand at 970.176 kb on - strand at 970.176 kb on - strand at 970.176 kb on - strand at 970.176 kb on - strand at 970.176 kb on - strand at 970.176 kb on - strand at 970.176 kb on - strand at 970.176 kb on - strand at 970.176 kb on - strand at 970.176 kb on - strand at 970.185 kb on - strand at 970.222 kb on + strand at 970.222 kb on + strand at 970.222 kb on + strand at 970.222 kb on + strand at 970.223 kb on - strand at 970.223 kb on - strand at 970.243 kb on + strand at 970.243 kb on + strand at 970.243 kb on + strand at 970.244 kb on - strand at 970.244 kb on - strand at 970.244 kb on - strand at 970.244 kb on - strand at 970.244 kb on - strand at 970.244 kb on - strand at 970.244 kb on - strand at 970.244 kb on - strand at 970.270 kb on + strand at 970.324 kb on + strand at 970.324 kb on + strand at 970.325 kb on - strand at 970.325 kb on - strand at 970.325 kb on - strand at 970.326 kb on + strand at 970.327 kb on - strand at 970.327 kb on - strand at 970.327 kb on - strand at 970.327 kb on - strand at 970.339 kb on + strand at 970.354 kb on + strand at 970.355 kb on - strand at 970.391 kb on - strand at 970.391 kb on - strand at 970.391 kb on - strand at 970.391 kb on - strand at 970.431 kb on + strand at 970.432 kb on - strand at 970.434 kb on - strand at 970.499 kb on - strand at 970.546 kb on + strand at 970.546 kb on + strand at 970.601 kb on + strand at 970.676 kb on + strand at 970.676 kb on + strand at 970.676 kb on + strand at 970.676 kb on + strand at 970.676 kb on + strand at 970.676 kb on + strand at 970.677 kb on - strand at 970.677 kb on - strand at 970.677 kb on - strand at 970.677 kb on - strand at 970.695 kb on + strand at 970.695 kb on + strand at 970.696 kb on - strand at 970.696 kb on - strand at 970.854 kb on - strand at 970.854 kb on - strand at 970.878 kb on + strand, within Psest_0895 at 970.878 kb on + strand, within Psest_0895 at 970.878 kb on + strand, within Psest_0895 at 970.878 kb on + strand, within Psest_0895 at 970.878 kb on + strand, within Psest_0895 at 970.878 kb on + strand, within Psest_0895 at 970.878 kb on + strand, within Psest_0895 at 970.878 kb on + strand, within Psest_0895 at 970.878 kb on + strand, within Psest_0895 at 970.878 kb on + strand, within Psest_0895 at 970.878 kb on + strand, within Psest_0895 at 970.878 kb on + strand, within Psest_0895 at 970.878 kb on + strand, within Psest_0895 at 970.878 kb on + strand, within Psest_0895 at 970.878 kb on + strand, within Psest_0895 at 970.878 kb on + strand, within Psest_0895 at 970.878 kb on + strand, within Psest_0895 at 970.879 kb on - strand, within Psest_0895 at 970.879 kb on - strand, within Psest_0895 at 970.879 kb on - strand, within Psest_0895 at 970.879 kb on - strand, within Psest_0895 at 970.879 kb on - strand, within Psest_0895 at 970.879 kb on - strand, within Psest_0895 at 970.879 kb on - strand, within Psest_0895 at 970.879 kb on - strand, within Psest_0895 at 970.879 kb on - strand, within Psest_0895 at 970.879 kb on - strand, within Psest_0895 at 970.879 kb on - strand, within Psest_0895 at 970.948 kb on + strand, within Psest_0895 at 970.948 kb on + strand, within Psest_0895 at 970.949 kb on - strand, within Psest_0895 at 970.949 kb on - strand, within Psest_0895 at 971.112 kb on + strand, within Psest_0895 at 971.112 kb on + strand, within Psest_0895 at 971.112 kb on + strand, within Psest_0895 at 971.112 kb on + strand, within Psest_0895 at 971.112 kb on + strand, within Psest_0895 at 971.113 kb on - strand, within Psest_0895 at 971.205 kb on + strand, within Psest_0895 at 971.206 kb on - strand, within Psest_0895 at 971.206 kb on - strand, within Psest_0895 at 971.206 kb on - strand, within Psest_0895 at 971.206 kb on - strand, within Psest_0895 at 971.206 kb on - strand, within Psest_0895 at 971.289 kb on + strand, within Psest_0895 at 971.290 kb on - strand, within Psest_0895 at 971.359 kb on + strand, within Psest_0895 at 971.359 kb on + strand, within Psest_0895 at 971.360 kb on - strand, within Psest_0895 at 971.360 kb on - strand, within Psest_0895 at 971.360 kb on - strand, within Psest_0895 at 971.362 kb on + strand, within Psest_0895 at 971.362 kb on + strand, within Psest_0895 at 971.362 kb on + strand, within Psest_0895 at 971.363 kb on - strand, within Psest_0895 at 971.363 kb on - strand, within Psest_0895 at 971.363 kb on - strand, within Psest_0895 at 971.363 kb on - strand, within Psest_0895 at 971.457 kb on + strand, within Psest_0895 at 971.457 kb on + strand, within Psest_0895 at 971.458 kb on - strand, within Psest_0895 at 971.458 kb on - strand, within Psest_0895 at 971.458 kb on - strand, within Psest_0895 at 971.468 kb on + strand, within Psest_0895 at 971.468 kb on + strand, within Psest_0895 at 971.469 kb on - strand, within Psest_0895 at 971.727 kb on + strand, within Psest_0895 at 971.727 kb on + strand, within Psest_0895 at 971.727 kb on + strand, within Psest_0895 at 971.727 kb on + strand, within Psest_0895 at 971.727 kb on + strand, within Psest_0895 at 971.749 kb on + strand, within Psest_0895 at 971.749 kb on + strand, within Psest_0895 at 971.749 kb on + strand, within Psest_0895 at 971.749 kb on + strand, within Psest_0895 at 971.750 kb on - strand, within Psest_0895 at 971.750 kb on - strand, within Psest_0895 at 971.750 kb on - strand, within Psest_0895 at 971.823 kb on + strand at 971.823 kb on + strand at 971.823 kb on + strand at 971.823 kb on + strand at 971.823 kb on + strand at 971.823 kb on + strand at 971.823 kb on + strand at 971.823 kb on + strand at 971.823 kb on + strand at 971.823 kb on + strand at 971.823 kb on + strand at 971.824 kb on - strand at 971.824 kb on - strand at 971.824 kb on - strand at 971.824 kb on - strand at 971.824 kb on - strand at 971.824 kb on - strand at 971.824 kb on - strand at 971.824 kb on - strand at 971.824 kb on - strand at 971.824 kb on - strand at 971.825 kb on + strand at 971.825 kb on + strand at 971.825 kb on + strand at 971.825 kb on + strand at 971.825 kb on + strand at 971.825 kb on + strand at 971.825 kb on + strand at 971.825 kb on + strand at 971.825 kb on + strand at 971.825 kb on + strand at 971.825 kb on + strand at 971.825 kb on + strand at 971.825 kb on + strand at 971.825 kb on + strand at 971.826 kb on - strand at 971.826 kb on - strand at 971.826 kb on - strand at 971.826 kb on - strand at 971.826 kb on - strand at 971.826 kb on - strand at 971.826 kb on - strand at 971.932 kb on + strand at 971.932 kb on + strand at 972.056 kb on - strand at 972.056 kb on - strand at 972.126 kb on + strand at 972.126 kb on + strand at 972.126 kb on + strand at 972.126 kb on + strand at 972.126 kb on + strand at 972.126 kb on + strand at 972.126 kb on + strand at 972.126 kb on + strand at 972.126 kb on + strand at 972.126 kb on + strand at 972.127 kb on - strand at 972.127 kb on - strand at 972.127 kb on - strand at 972.127 kb on - strand at 972.127 kb on - strand at 972.127 kb on - strand at 972.129 kb on + strand at 972.137 kb on + strand at 972.137 kb on + strand at 972.138 kb on - strand at 972.138 kb on - strand at 972.149 kb on + strand at 972.149 kb on + strand at 972.150 kb on - strand at 972.150 kb on - strand at 972.156 kb on + strand at 972.157 kb on - strand at 972.157 kb on - strand at 972.157 kb on - strand at 972.157 kb on - strand at 972.186 kb on - strand at 972.202 kb on - strand at 972.265 kb on - strand at 972.265 kb on - strand at 972.265 kb on - strand at 972.275 kb on - strand at 972.338 kb on + strand at 972.338 kb on + strand at 972.338 kb on + strand at 972.339 kb on - strand at 972.477 kb on - strand at 972.538 kb on + strand at 972.539 kb on - strand at 972.539 kb on - strand at 972.550 kb on + strand at 972.581 kb on + strand at 972.581 kb on + strand at 972.581 kb on + strand at 972.581 kb on + strand at 972.582 kb on - strand at 972.582 kb on - strand at 972.582 kb on - strand at 972.584 kb on + strand at 972.585 kb on - strand at 972.585 kb on - strand at 972.640 kb on - strand at 972.640 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.00625 mg/ml remove 969,753 - Psest_0893 0.54 -0.7 969,753 - Psest_0893 0.54 +2.1 969,796 + Psest_0893 0.58 +1.3 969,796 + Psest_0893 0.58 -0.3 969,796 + Psest_0893 0.58 -0.6 969,797 - Psest_0893 0.58 +0.8 969,797 - Psest_0893 0.58 +1.9 969,813 + Psest_0893 0.60 -1.3 969,817 + Psest_0893 0.61 -0.9 969,817 + Psest_0893 0.61 +0.0 969,817 + Psest_0893 0.61 +1.2 969,817 + Psest_0893 0.61 -1.0 969,817 + Psest_0893 0.61 +0.1 969,817 + Psest_0893 0.61 +2.4 969,817 + Psest_0893 0.61 -0.6 969,817 + Psest_0893 0.61 +0.7 969,818 - Psest_0893 0.61 +1.6 969,818 - Psest_0893 0.61 -0.7 969,873 + Psest_0893 0.67 -0.0 969,874 - Psest_0893 0.67 +0.5 969,874 - Psest_0893 0.67 -0.3 969,916 + Psest_0893 0.71 +0.7 969,916 + Psest_0893 0.71 +1.4 969,916 + Psest_0893 0.71 +0.7 970,068 + Psest_0893 0.88 -1.4 970,068 + Psest_0893 0.88 -2.6 970,068 + Psest_0893 0.88 -1.2 970,068 + Psest_0893 0.88 +0.3 970,068 + Psest_0893 0.88 +1.2 970,068 + Psest_0893 0.88 +0.9 970,069 - Psest_0893 0.88 -1.9 970,069 - Psest_0893 0.88 +0.9 970,069 - Psest_0893 0.88 +1.2 970,070 + Psest_0893 0.88 -0.5 970,070 + Psest_0893 0.88 -0.6 970,070 + Psest_0893 0.88 -0.2 970,070 + Psest_0893 0.88 -1.8 970,070 + Psest_0893 0.88 -2.2 970,070 + Psest_0893 0.88 +1.2 970,070 + Psest_0893 0.88 -0.5 970,070 + Psest_0893 0.88 -2.8 970,071 - Psest_0893 0.88 +1.1 970,071 - Psest_0893 0.88 -2.7 970,071 - Psest_0893 0.88 -0.8 970,116 - +0.8 970,116 - -0.9 970,126 + +1.7 970,127 - -0.9 970,127 - +0.2 970,127 - -1.6 970,152 + +0.3 970,152 + -0.1 970,152 + +0.8 970,153 - +0.6 970,153 - +0.6 970,175 + -2.1 970,175 + +0.8 970,175 + -1.4 970,175 + +0.8 970,175 + -0.2 970,176 - -0.2 970,176 - +1.1 970,176 - -0.8 970,176 - +1.0 970,176 - +1.2 970,176 - +0.4 970,176 - -0.2 970,176 - -0.2 970,176 - -1.3 970,176 - +0.1 970,176 - +1.2 970,176 - -1.9 970,185 - +0.4 970,222 + +2.0 970,222 + +0.1 970,222 + -0.0 970,222 + +1.1 970,223 - -0.2 970,223 - +0.6 970,243 + +0.4 970,243 + +2.1 970,243 + +0.1 970,244 - +2.7 970,244 - +1.3 970,244 - -1.2 970,244 - -1.5 970,244 - +0.4 970,244 - -0.1 970,244 - +1.0 970,244 - -0.1 970,270 + -0.9 970,324 + +1.0 970,324 + -1.8 970,325 - +0.6 970,325 - -0.5 970,325 - -0.4 970,326 + +1.5 970,327 - +1.6 970,327 - +0.5 970,327 - +0.8 970,327 - +1.2 970,339 + -0.5 970,354 + -0.2 970,355 - +0.7 970,391 - -2.4 970,391 - -0.6 970,391 - -0.6 970,391 - -0.3 970,431 + +3.2 970,432 - -0.1 970,434 - -0.2 970,499 - -2.2 970,546 + +0.9 970,546 + +1.1 970,601 + +2.5 970,676 + +0.9 970,676 + -0.9 970,676 + -2.1 970,676 + +0.1 970,676 + +0.3 970,676 + +1.2 970,677 - -2.4 970,677 - +1.7 970,677 - +3.3 970,677 - -1.4 970,695 + +1.7 970,695 + -1.2 970,696 - +0.1 970,696 - -1.1 970,854 - -2.3 970,854 - -3.6 970,878 + Psest_0895 0.12 +0.7 970,878 + Psest_0895 0.12 -1.0 970,878 + Psest_0895 0.12 -1.2 970,878 + Psest_0895 0.12 +0.7 970,878 + Psest_0895 0.12 +1.1 970,878 + Psest_0895 0.12 +0.7 970,878 + Psest_0895 0.12 +1.6 970,878 + Psest_0895 0.12 +2.6 970,878 + Psest_0895 0.12 +1.9 970,878 + Psest_0895 0.12 +1.5 970,878 + Psest_0895 0.12 +0.8 970,878 + Psest_0895 0.12 +1.5 970,878 + Psest_0895 0.12 -1.6 970,878 + Psest_0895 0.12 +0.9 970,878 + Psest_0895 0.12 -0.3 970,878 + Psest_0895 0.12 +1.8 970,878 + Psest_0895 0.12 +0.4 970,879 - Psest_0895 0.12 +1.1 970,879 - Psest_0895 0.12 +1.4 970,879 - Psest_0895 0.12 +2.5 970,879 - Psest_0895 0.12 -0.2 970,879 - Psest_0895 0.12 -0.6 970,879 - Psest_0895 0.12 +1.0 970,879 - Psest_0895 0.12 +0.2 970,879 - Psest_0895 0.12 -0.0 970,879 - Psest_0895 0.12 +0.4 970,879 - Psest_0895 0.12 -2.8 970,879 - Psest_0895 0.12 +0.7 970,948 + Psest_0895 0.18 +1.1 970,948 + Psest_0895 0.18 -0.7 970,949 - Psest_0895 0.18 +1.3 970,949 - Psest_0895 0.18 -0.2 971,112 + Psest_0895 0.32 +2.3 971,112 + Psest_0895 0.32 +0.6 971,112 + Psest_0895 0.32 +0.9 971,112 + Psest_0895 0.32 +2.6 971,112 + Psest_0895 0.32 -0.5 971,113 - Psest_0895 0.32 +3.4 971,205 + Psest_0895 0.40 +0.2 971,206 - Psest_0895 0.40 -0.2 971,206 - Psest_0895 0.40 +0.0 971,206 - Psest_0895 0.40 +0.6 971,206 - Psest_0895 0.40 +1.3 971,206 - Psest_0895 0.40 -1.3 971,289 + Psest_0895 0.48 +3.1 971,290 - Psest_0895 0.48 +0.5 971,359 + Psest_0895 0.54 +1.8 971,359 + Psest_0895 0.54 +0.9 971,360 - Psest_0895 0.54 -0.5 971,360 - Psest_0895 0.54 +2.7 971,360 - Psest_0895 0.54 -0.7 971,362 + Psest_0895 0.54 -0.8 971,362 + Psest_0895 0.54 -1.9 971,362 + Psest_0895 0.54 -1.4 971,363 - Psest_0895 0.54 +1.7 971,363 - Psest_0895 0.54 -0.4 971,363 - Psest_0895 0.54 -0.3 971,363 - Psest_0895 0.54 -1.4 971,457 + Psest_0895 0.62 +0.3 971,457 + Psest_0895 0.62 +3.3 971,458 - Psest_0895 0.62 -1.3 971,458 - Psest_0895 0.62 -1.4 971,458 - Psest_0895 0.62 +1.1 971,468 + Psest_0895 0.63 +1.4 971,468 + Psest_0895 0.63 -3.2 971,469 - Psest_0895 0.63 -0.1 971,727 + Psest_0895 0.86 -1.1 971,727 + Psest_0895 0.86 -0.1 971,727 + Psest_0895 0.86 -0.7 971,727 + Psest_0895 0.86 +1.4 971,727 + Psest_0895 0.86 -0.4 971,749 + Psest_0895 0.88 -0.9 971,749 + Psest_0895 0.88 -1.4 971,749 + Psest_0895 0.88 -1.7 971,749 + Psest_0895 0.88 -0.7 971,750 - Psest_0895 0.88 -0.2 971,750 - Psest_0895 0.88 +0.1 971,750 - Psest_0895 0.88 -1.5 971,823 + +2.4 971,823 + +1.9 971,823 + +0.3 971,823 + +0.6 971,823 + +0.8 971,823 + +0.1 971,823 + -0.4 971,823 + +0.2 971,823 + -0.2 971,823 + +1.5 971,823 + +0.3 971,824 - -2.3 971,824 - -0.3 971,824 - +0.5 971,824 - -0.9 971,824 - -1.1 971,824 - -1.0 971,824 - -1.3 971,824 - -0.6 971,824 - -1.0 971,824 - -3.0 971,825 + +1.4 971,825 + +1.0 971,825 + -0.3 971,825 + -0.8 971,825 + -0.7 971,825 + -1.3 971,825 + +2.3 971,825 + +0.2 971,825 + +2.1 971,825 + -0.9 971,825 + +1.7 971,825 + +1.5 971,825 + +0.6 971,825 + -0.6 971,826 - -0.9 971,826 - +0.0 971,826 - +0.3 971,826 - +0.0 971,826 - +1.7 971,826 - -2.5 971,826 - -0.2 971,932 + +1.6 971,932 + -0.7 972,056 - -0.7 972,056 - -0.2 972,126 + +2.0 972,126 + +0.2 972,126 + +1.4 972,126 + +2.7 972,126 + -1.4 972,126 + -0.5 972,126 + -1.3 972,126 + -0.1 972,126 + +0.9 972,126 + -1.5 972,127 - +0.2 972,127 - +2.0 972,127 - +0.5 972,127 - -0.0 972,127 - +3.1 972,127 - +0.4 972,129 + +1.0 972,137 + -1.9 972,137 + -0.1 972,138 - +0.0 972,138 - -0.1 972,149 + -0.1 972,149 + -0.0 972,150 - +0.9 972,150 - -0.0 972,156 + +1.2 972,157 - -2.0 972,157 - -2.7 972,157 - +0.1 972,157 - +0.4 972,186 - +0.3 972,202 - +0.4 972,265 - -2.4 972,265 - -2.7 972,265 - +1.1 972,275 - +1.8 972,338 + -0.0 972,338 + -0.5 972,338 + -0.9 972,339 - +1.5 972,477 - -0.4 972,538 + -1.2 972,539 - -1.8 972,539 - +0.1 972,550 + +1.1 972,581 + -0.2 972,581 + +1.5 972,581 + -0.6 972,581 + -1.4 972,582 - -1.8 972,582 - +0.2 972,582 - -0.8 972,584 + +1.2 972,585 - -0.0 972,585 - +1.5 972,640 - +0.2 972,640 - -2.7
Or see this region's nucleotide sequence