Experiment: Spectinomycin 0.00625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0427 and Psest_0428 are separated by 753 nucleotides Psest_0428 and Psest_0429 overlap by 4 nucleotides Psest_0429 and Psest_0430 are separated by 8 nucleotides
Psest_0427: Psest_0427 - Transposase and inactivated derivatives, at 465,266 to 465,544
_0427
Psest_0428: Psest_0428 - phosphonate ABC transporter, ATP-binding protein, at 466,298 to 467,125
_0428
Psest_0429: Psest_0429 - phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein, at 467,122 to 467,985
_0429
Psest_0430: Psest_0430 - phosphonate ABC transporter, permease protein PhnE, at 467,994 to 468,821
_0430
Position (kb) 466
467
468 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 465.586 kb on + strand at 465.707 kb on - strand at 465.707 kb on - strand at 465.934 kb on + strand at 465.935 kb on - strand at 465.935 kb on - strand at 465.935 kb on - strand at 465.935 kb on - strand at 465.935 kb on - strand at 465.970 kb on + strand at 465.970 kb on + strand at 465.971 kb on - strand at 465.978 kb on + strand at 465.978 kb on + strand at 465.978 kb on + strand at 465.979 kb on - strand at 465.979 kb on - strand at 465.979 kb on - strand at 465.979 kb on - strand at 466.000 kb on + strand at 466.000 kb on + strand at 466.000 kb on + strand at 466.000 kb on + strand at 466.000 kb on + strand at 466.000 kb on + strand at 466.000 kb on + strand at 466.001 kb on - strand at 466.001 kb on - strand at 466.001 kb on - strand at 466.001 kb on - strand at 466.001 kb on - strand at 466.001 kb on - strand at 466.012 kb on + strand at 466.012 kb on + strand at 466.012 kb on + strand at 466.013 kb on - strand at 466.013 kb on - strand at 466.013 kb on - strand at 466.013 kb on - strand at 466.013 kb on - strand at 466.013 kb on - strand at 466.014 kb on + strand at 466.014 kb on + strand at 466.015 kb on - strand at 466.015 kb on - strand at 466.051 kb on + strand at 466.051 kb on + strand at 466.051 kb on + strand at 466.051 kb on + strand at 466.052 kb on - strand at 466.069 kb on + strand at 466.074 kb on + strand at 466.075 kb on - strand at 466.091 kb on + strand at 466.092 kb on - strand at 466.133 kb on - strand at 466.190 kb on + strand at 466.190 kb on + strand at 466.190 kb on + strand at 466.190 kb on + strand at 466.191 kb on - strand at 466.191 kb on - strand at 466.191 kb on - strand at 466.191 kb on - strand at 466.191 kb on - strand at 466.378 kb on - strand at 466.587 kb on + strand, within Psest_0428 at 466.587 kb on + strand, within Psest_0428 at 466.937 kb on + strand, within Psest_0428 at 467.039 kb on + strand, within Psest_0428 at 467.039 kb on + strand, within Psest_0428 at 467.039 kb on + strand, within Psest_0428 at 467.039 kb on + strand, within Psest_0428 at 467.039 kb on + strand, within Psest_0428 at 467.039 kb on + strand, within Psest_0428 at 467.039 kb on + strand, within Psest_0428 at 467.039 kb on + strand, within Psest_0428 at 467.039 kb on + strand, within Psest_0428 at 467.040 kb on - strand, within Psest_0428 at 467.040 kb on - strand, within Psest_0428 at 467.040 kb on - strand, within Psest_0428 at 467.040 kb on - strand, within Psest_0428 at 467.040 kb on - strand, within Psest_0428 at 467.040 kb on - strand, within Psest_0428 at 467.040 kb on - strand, within Psest_0428 at 467.040 kb on - strand, within Psest_0428 at 467.040 kb on - strand, within Psest_0428 at 467.040 kb on - strand, within Psest_0428 at 467.054 kb on - strand at 467.133 kb on - strand at 467.144 kb on + strand at 467.144 kb on + strand at 467.144 kb on + strand at 467.145 kb on - strand at 467.213 kb on + strand, within Psest_0429 at 467.214 kb on - strand, within Psest_0429 at 467.282 kb on - strand, within Psest_0429 at 467.332 kb on + strand, within Psest_0429 at 467.368 kb on - strand, within Psest_0429 at 467.380 kb on + strand, within Psest_0429 at 467.380 kb on + strand, within Psest_0429 at 467.381 kb on - strand, within Psest_0429 at 467.398 kb on + strand, within Psest_0429 at 467.399 kb on - strand, within Psest_0429 at 467.399 kb on - strand, within Psest_0429 at 467.399 kb on - strand, within Psest_0429 at 467.399 kb on - strand, within Psest_0429 at 467.467 kb on + strand, within Psest_0429 at 467.467 kb on + strand, within Psest_0429 at 467.467 kb on + strand, within Psest_0429 at 467.468 kb on - strand, within Psest_0429 at 467.512 kb on + strand, within Psest_0429 at 467.523 kb on + strand, within Psest_0429 at 467.524 kb on - strand, within Psest_0429 at 467.542 kb on + strand, within Psest_0429 at 467.542 kb on + strand, within Psest_0429 at 467.543 kb on - strand, within Psest_0429 at 467.627 kb on - strand, within Psest_0429 at 467.712 kb on - strand, within Psest_0429 at 467.712 kb on - strand, within Psest_0429 at 467.712 kb on - strand, within Psest_0429 at 467.712 kb on - strand, within Psest_0429 at 467.765 kb on + strand, within Psest_0429 at 467.765 kb on + strand, within Psest_0429 at 467.766 kb on - strand, within Psest_0429 at 467.766 kb on - strand, within Psest_0429 at 467.766 kb on - strand, within Psest_0429 at 467.766 kb on - strand, within Psest_0429 at 467.766 kb on - strand, within Psest_0429 at 467.766 kb on - strand, within Psest_0429 at 467.766 kb on - strand, within Psest_0429 at 467.766 kb on - strand, within Psest_0429 at 467.766 kb on - strand, within Psest_0429 at 467.852 kb on + strand, within Psest_0429 at 467.852 kb on + strand, within Psest_0429 at 467.852 kb on + strand, within Psest_0429 at 467.852 kb on + strand, within Psest_0429 at 467.852 kb on + strand, within Psest_0429 at 467.852 kb on + strand, within Psest_0429 at 467.853 kb on - strand, within Psest_0429 at 467.853 kb on - strand, within Psest_0429 at 467.853 kb on - strand, within Psest_0429 at 467.853 kb on - strand, within Psest_0429 at 467.853 kb on - strand, within Psest_0429 at 467.853 kb on - strand, within Psest_0429 at 467.993 kb on + strand at 468.007 kb on - strand at 468.100 kb on + strand, within Psest_0430 at 468.100 kb on + strand, within Psest_0430 at 468.101 kb on - strand, within Psest_0430 at 468.101 kb on - strand, within Psest_0430 at 468.101 kb on - strand, within Psest_0430
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.00625 mg/ml remove 465,586 + -0.5 465,707 - +1.4 465,707 - -1.5 465,934 + +0.3 465,935 - +0.4 465,935 - +1.1 465,935 - -0.1 465,935 - -0.4 465,935 - -0.3 465,970 + +1.4 465,970 + -1.7 465,971 - +0.3 465,978 + -1.1 465,978 + +2.0 465,978 + -1.6 465,979 - +0.7 465,979 - -0.5 465,979 - +2.3 465,979 - +1.5 466,000 + +0.4 466,000 + +0.0 466,000 + +0.5 466,000 + +0.7 466,000 + +0.8 466,000 + -0.3 466,000 + +0.8 466,001 - -0.9 466,001 - +0.5 466,001 - +1.2 466,001 - +0.2 466,001 - +1.2 466,001 - +0.5 466,012 + -2.3 466,012 + +0.1 466,012 + +0.2 466,013 - +1.8 466,013 - -0.2 466,013 - -0.0 466,013 - -0.3 466,013 - +2.9 466,013 - +0.1 466,014 + -2.0 466,014 + +0.2 466,015 - +1.3 466,015 - +1.8 466,051 + +0.4 466,051 + +0.2 466,051 + -1.0 466,051 + -0.1 466,052 - +1.9 466,069 + +2.5 466,074 + +0.8 466,075 - -1.1 466,091 + -1.1 466,092 - -0.9 466,133 - -1.9 466,190 + +0.9 466,190 + +0.3 466,190 + -1.4 466,190 + +0.5 466,191 - -0.9 466,191 - +0.2 466,191 - -0.3 466,191 - +2.0 466,191 - -0.6 466,378 - -0.8 466,587 + Psest_0428 0.35 +1.3 466,587 + Psest_0428 0.35 +0.2 466,937 + Psest_0428 0.77 +1.0 467,039 + Psest_0428 0.89 +1.5 467,039 + Psest_0428 0.89 -1.1 467,039 + Psest_0428 0.89 +0.8 467,039 + Psest_0428 0.89 -0.6 467,039 + Psest_0428 0.89 +1.8 467,039 + Psest_0428 0.89 -1.0 467,039 + Psest_0428 0.89 +1.3 467,039 + Psest_0428 0.89 +1.3 467,039 + Psest_0428 0.89 +0.3 467,040 - Psest_0428 0.90 -0.8 467,040 - Psest_0428 0.90 +0.0 467,040 - Psest_0428 0.90 +1.3 467,040 - Psest_0428 0.90 +1.2 467,040 - Psest_0428 0.90 -0.9 467,040 - Psest_0428 0.90 +0.5 467,040 - Psest_0428 0.90 +2.8 467,040 - Psest_0428 0.90 -0.5 467,040 - Psest_0428 0.90 +1.6 467,040 - Psest_0428 0.90 +1.1 467,054 - +0.0 467,133 - +0.9 467,144 + -1.3 467,144 + +1.4 467,144 + +0.5 467,145 - -0.7 467,213 + Psest_0429 0.11 -1.7 467,214 - Psest_0429 0.11 +0.5 467,282 - Psest_0429 0.19 -0.6 467,332 + Psest_0429 0.24 +0.6 467,368 - Psest_0429 0.28 +0.8 467,380 + Psest_0429 0.30 -1.0 467,380 + Psest_0429 0.30 -0.9 467,381 - Psest_0429 0.30 +0.6 467,398 + Psest_0429 0.32 -0.5 467,399 - Psest_0429 0.32 +0.7 467,399 - Psest_0429 0.32 +0.4 467,399 - Psest_0429 0.32 +0.1 467,399 - Psest_0429 0.32 +0.3 467,467 + Psest_0429 0.40 -3.0 467,467 + Psest_0429 0.40 +0.5 467,467 + Psest_0429 0.40 -0.1 467,468 - Psest_0429 0.40 -1.0 467,512 + Psest_0429 0.45 +1.0 467,523 + Psest_0429 0.46 +0.3 467,524 - Psest_0429 0.47 +0.8 467,542 + Psest_0429 0.49 +2.3 467,542 + Psest_0429 0.49 -0.7 467,543 - Psest_0429 0.49 +4.6 467,627 - Psest_0429 0.58 +1.0 467,712 - Psest_0429 0.68 -1.1 467,712 - Psest_0429 0.68 +1.4 467,712 - Psest_0429 0.68 +0.2 467,712 - Psest_0429 0.68 -0.5 467,765 + Psest_0429 0.74 +1.7 467,765 + Psest_0429 0.74 +0.9 467,766 - Psest_0429 0.75 -1.0 467,766 - Psest_0429 0.75 +0.8 467,766 - Psest_0429 0.75 -2.3 467,766 - Psest_0429 0.75 -0.5 467,766 - Psest_0429 0.75 -1.3 467,766 - Psest_0429 0.75 +1.3 467,766 - Psest_0429 0.75 +0.5 467,766 - Psest_0429 0.75 +0.5 467,766 - Psest_0429 0.75 -0.2 467,852 + Psest_0429 0.84 +0.3 467,852 + Psest_0429 0.84 -0.7 467,852 + Psest_0429 0.84 -2.3 467,852 + Psest_0429 0.84 +1.3 467,852 + Psest_0429 0.84 +0.6 467,852 + Psest_0429 0.84 -0.2 467,853 - Psest_0429 0.85 +0.0 467,853 - Psest_0429 0.85 +0.4 467,853 - Psest_0429 0.85 +0.7 467,853 - Psest_0429 0.85 +0.0 467,853 - Psest_0429 0.85 -0.8 467,853 - Psest_0429 0.85 -1.3 467,993 + +0.2 468,007 - -1.6 468,100 + Psest_0430 0.13 -2.6 468,100 + Psest_0430 0.13 +1.2 468,101 - Psest_0430 0.13 +0.8 468,101 - Psest_0430 0.13 +1.2 468,101 - Psest_0430 0.13 -0.7
Or see this region's nucleotide sequence