Experiment: Spectinomycin 0.00625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2066 and Psest_2067 are separated by 2 nucleotides Psest_2067 and Psest_2068 overlap by 4 nucleotides
Psest_2066: Psest_2066 - ABC-type uncharacterized transport system, permease component, at 2,192,268 to 2,193,341
_2066
Psest_2067: Psest_2067 - ABC-type oligopeptide transport system, periplasmic component, at 2,193,344 to 2,195,230
_2067
Psest_2068: Psest_2068 - ABC-type oligopeptide transport system, periplasmic component, at 2,195,227 to 2,197,056
_2068
Position (kb)
2193
2194
2195
2196 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5 at 2192.926 kb on + strand, within Psest_2066 at 2193.536 kb on - strand, within Psest_2067 at 2194.305 kb on + strand, within Psest_2067 at 2194.753 kb on - strand, within Psest_2067 at 2194.880 kb on - strand, within Psest_2067 at 2195.277 kb on + strand at 2195.278 kb on - strand at 2195.280 kb on - strand at 2195.520 kb on - strand, within Psest_2068 at 2195.520 kb on - strand, within Psest_2068 at 2195.586 kb on - strand, within Psest_2068 at 2195.606 kb on + strand, within Psest_2068 at 2195.606 kb on + strand, within Psest_2068 at 2195.957 kb on + strand, within Psest_2068 at 2195.958 kb on - strand, within Psest_2068 at 2195.958 kb on - strand, within Psest_2068 at 2195.958 kb on - strand, within Psest_2068 at 2195.958 kb on - strand, within Psest_2068 at 2195.958 kb on - strand, within Psest_2068 at 2195.984 kb on + strand, within Psest_2068 at 2195.985 kb on - strand, within Psest_2068 at 2195.985 kb on - strand, within Psest_2068 at 2195.985 kb on - strand, within Psest_2068 at 2195.985 kb on - strand, within Psest_2068 at 2195.985 kb on - strand, within Psest_2068 at 2196.198 kb on - strand, within Psest_2068 at 2196.198 kb on - strand, within Psest_2068 at 2196.198 kb on - strand, within Psest_2068 at 2196.198 kb on - strand, within Psest_2068 at 2196.198 kb on - strand, within Psest_2068
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.00625 mg/ml remove 2,192,926 + Psest_2066 0.61 +5.5 2,193,536 - Psest_2067 0.10 +5.1 2,194,305 + Psest_2067 0.51 +0.6 2,194,753 - Psest_2067 0.75 -0.6 2,194,880 - Psest_2067 0.81 +0.4 2,195,277 + +5.6 2,195,278 - -0.9 2,195,280 - +0.1 2,195,520 - Psest_2068 0.16 +0.9 2,195,520 - Psest_2068 0.16 +0.8 2,195,586 - Psest_2068 0.20 -1.1 2,195,606 + Psest_2068 0.21 +4.8 2,195,606 + Psest_2068 0.21 +4.2 2,195,957 + Psest_2068 0.40 +3.6 2,195,958 - Psest_2068 0.40 +3.1 2,195,958 - Psest_2068 0.40 +4.6 2,195,958 - Psest_2068 0.40 +2.7 2,195,958 - Psest_2068 0.40 -0.2 2,195,958 - Psest_2068 0.40 +0.5 2,195,984 + Psest_2068 0.41 +4.2 2,195,985 - Psest_2068 0.41 +1.1 2,195,985 - Psest_2068 0.41 +3.2 2,195,985 - Psest_2068 0.41 +0.3 2,195,985 - Psest_2068 0.41 +0.3 2,195,985 - Psest_2068 0.41 +3.3 2,196,198 - Psest_2068 0.53 +2.0 2,196,198 - Psest_2068 0.53 +0.9 2,196,198 - Psest_2068 0.53 +1.1 2,196,198 - Psest_2068 0.53 +1.1 2,196,198 - Psest_2068 0.53 +4.5
Or see this region's nucleotide sequence