Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2023

Experiment: Spectinomycin 0.00625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.00625 mg/ml
2,141,285	-				+0.2
2,141,553	+		Psest_2022	0.45	-0.6
2,141,553	+		Psest_2022	0.45	-0.0
2,141,580	+		Psest_2022	0.51	-0.4
2,141,581	-		Psest_2022	0.51	+1.0
2,141,586	+		Psest_2022	0.53	+0.7
2,141,587	-		Psest_2022	0.53	-0.0
2,141,587	-		Psest_2022	0.53	+1.9
2,141,587	-		Psest_2022	0.53	-0.2
2,141,777	-				-3.5
2,141,794	+				-1.7
2,141,795	-				+1.0
2,141,810	+				-0.2
2,141,810	+				+1.1
2,141,810	+				+0.8
2,141,811	-				+0.8
2,141,811	-				-2.5
2,142,394	-		Psest_2023	0.22	-2.6
2,142,394	-		Psest_2023	0.22	-1.5
2,142,481	-		Psest_2023	0.26	-1.2
2,142,613	-		Psest_2023	0.32	-2.5
2,142,613	-		Psest_2023	0.32	-1.6
2,143,159	-		Psest_2023	0.57	+1.0
2,143,281	+		Psest_2023	0.62	-0.6
2,143,302	+		Psest_2023	0.63	-2.5
2,143,599	+		Psest_2023	0.76	-1.6
2,143,600	-		Psest_2023	0.76	+0.3
2,143,663	-		Psest_2023	0.79	-0.6
2,143,746	+		Psest_2023	0.83	-1.1
2,144,045	+				-1.7
2,144,045	+				+0.5
2,144,100	+				-0.2
2,144,100	+				-2.5
2,144,127	+				-1.3
2,144,246	+				-1.5
2,144,314	-				-0.2
2,144,359	-				-0.5
2,144,361	-				-1.3
2,144,398	+				-1.0
2,144,399	-				-1.4
2,144,415	+				-1.1
2,144,415	+				-3.9
2,144,416	-				+0.9
2,144,416	-				+1.3
2,144,416	-				-1.6
2,144,416	-				+0.5
2,144,416	-				+0.8
2,144,582	+				+1.0
2,144,582	+				-1.4
2,144,582	+				-0.0
2,144,583	-				+0.3
2,144,583	-				-0.3
2,144,583	-				+1.7
2,144,583	-				-0.2
2,144,584	+				-1.3
2,144,584	+				-1.3
2,144,584	+				+0.0
2,144,584	+				-0.3
2,144,584	+				-1.8
2,144,585	-				+0.8
2,144,585	-				+0.2
2,144,585	-				+1.6
2,144,585	-				+1.7
2,144,585	-				+0.6
2,144,585	-				-1.5
2,144,585	-				+3.3
2,144,586	+				-2.1
2,144,586	+				-0.6
2,144,586	+				-1.8
2,144,586	+				-1.2
2,144,586	+				-1.1
2,144,586	+				-1.6
2,144,586	+				-2.5
2,144,586	+				-1.4
2,144,586	+				-1.0
2,144,586	+				-0.4
2,144,586	+				+0.4
2,144,586	+				-2.9
2,144,587	-				+1.7
2,144,587	-				+2.7
2,144,587	-				+0.6
2,144,587	-				+3.4
2,144,587	-				-0.7
2,144,587	-				+1.0
2,144,587	-				-1.2
2,144,587	-				-0.3
2,144,587	-				-0.5
2,144,587	-				+1.3
2,144,587	-				+0.3
2,144,661	-		Psest_2024	0.14	+1.3
2,144,774	+		Psest_2024	0.23	+1.3
2,144,774	+		Psest_2024	0.23	-1.0
2,144,775	-		Psest_2024	0.23	+2.3
2,144,775	-		Psest_2024	0.23	-1.3
2,144,775	-		Psest_2024	0.23	-0.7
2,144,864	+		Psest_2024	0.30	-0.5
2,144,864	+		Psest_2024	0.30	-0.3
2,144,865	-		Psest_2024	0.30	+0.7
2,144,865	-		Psest_2024	0.30	-0.7
2,144,865	-		Psest_2024	0.30	+0.1
2,144,969	+		Psest_2024	0.38	+0.8
2,144,970	-		Psest_2024	0.39	+0.8
2,144,970	-		Psest_2024	0.39	-1.2
2,144,970	-		Psest_2024	0.39	+2.1
2,144,980	-		Psest_2024	0.39	+0.1