Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0992

Experiment: Benzethonium chloride 0.0125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0991 and Psest_0992 are separated by 65 nucleotidesPsest_0992 and Psest_0993 are separated by 143 nucleotides Psest_0991: Psest_0991 - Predicted SAM-dependent methyltransferases, at 1,073,564 to 1,074,580 _0991 Psest_0992: Psest_0992 - Uncharacterized protein conserved in bacteria, at 1,074,646 to 1,075,521 _0992 Psest_0993: Psest_0993 - Glucose-6-phosphate isomerase, at 1,075,665 to 1,077,329 _0993 Position (kb) 1074 1075 1076Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1073.791 kb on - strand, within Psest_0991at 1073.852 kb on + strand, within Psest_0991at 1073.853 kb on - strand, within Psest_0991at 1073.956 kb on - strand, within Psest_0991at 1073.956 kb on - strand, within Psest_0991at 1074.101 kb on - strand, within Psest_0991at 1074.101 kb on - strand, within Psest_0991at 1074.102 kb on + strand, within Psest_0991at 1074.102 kb on + strand, within Psest_0991at 1074.102 kb on + strand, within Psest_0991at 1074.127 kb on + strand, within Psest_0991at 1074.212 kb on + strand, within Psest_0991at 1074.327 kb on + strand, within Psest_0991at 1074.598 kb on + strandat 1074.648 kb on - strandat 1074.883 kb on + strand, within Psest_0992at 1074.883 kb on + strand, within Psest_0992at 1074.893 kb on - strand, within Psest_0992at 1074.893 kb on - strand, within Psest_0992at 1074.893 kb on - strand, within Psest_0992at 1074.945 kb on - strand, within Psest_0992at 1074.945 kb on - strand, within Psest_0992at 1075.019 kb on + strand, within Psest_0992at 1075.019 kb on + strand, within Psest_0992at 1075.022 kb on + strand, within Psest_0992at 1075.023 kb on - strand, within Psest_0992at 1075.448 kb on + strandat 1075.555 kb on + strandat 1075.558 kb on + strandat 1075.558 kb on + strandat 1075.558 kb on + strandat 1075.558 kb on + strandat 1075.558 kb on + strandat 1075.559 kb on - strandat 1075.559 kb on - strandat 1075.757 kb on - strandat 1075.853 kb on - strand, within Psest_0993at 1076.057 kb on - strand, within Psest_0993at 1076.156 kb on - strand, within Psest_0993at 1076.296 kb on + strand, within Psest_0993at 1076.296 kb on + strand, within Psest_0993at 1076.296 kb on + strand, within Psest_0993at 1076.296 kb on + strand, within Psest_0993at 1076.297 kb on - strand, within Psest_0993at 1076.297 kb on - strand, within Psest_0993at 1076.305 kb on + strand, within Psest_0993at 1076.306 kb on - strand, within Psest_0993at 1076.320 kb on + strand, within Psest_0993at 1076.321 kb on - strand, within Psest_0993at 1076.420 kb on + strand, within Psest_0993at 1076.420 kb on + strand, within Psest_0993at 1076.420 kb on + strand, within Psest_0993at 1076.425 kb on + strand, within Psest_0993at 1076.425 kb on + strand, within Psest_0993at 1076.425 kb on + strand, within Psest_0993at 1076.425 kb on + strand, within Psest_0993at 1076.506 kb on + strand, within Psest_0993

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.0125 mM
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1,073,791 - Psest_0991 0.22 +0.5
1,073,852 + Psest_0991 0.28 -1.5
1,073,853 - Psest_0991 0.28 +0.1
1,073,956 - Psest_0991 0.39 -1.7
1,073,956 - Psest_0991 0.39 -0.7
1,074,101 - Psest_0991 0.53 -1.3
1,074,101 - Psest_0991 0.53 +0.4
1,074,102 + Psest_0991 0.53 -2.1
1,074,102 + Psest_0991 0.53 +1.8
1,074,102 + Psest_0991 0.53 +0.4
1,074,127 + Psest_0991 0.55 -0.6
1,074,212 + Psest_0991 0.64 -0.9
1,074,327 + Psest_0991 0.75 +0.8
1,074,598 + -0.8
1,074,648 - +0.6
1,074,883 + Psest_0992 0.27 +2.2
1,074,883 + Psest_0992 0.27 +2.0
1,074,893 - Psest_0992 0.28 -1.5
1,074,893 - Psest_0992 0.28 +2.4
1,074,893 - Psest_0992 0.28 +0.8
1,074,945 - Psest_0992 0.34 +2.0
1,074,945 - Psest_0992 0.34 +1.0
1,075,019 + Psest_0992 0.43 -0.1
1,075,019 + Psest_0992 0.43 +3.1
1,075,022 + Psest_0992 0.43 -0.9
1,075,023 - Psest_0992 0.43 -2.2
1,075,448 + -1.4
1,075,555 + +0.4
1,075,558 + +0.7
1,075,558 + +1.0
1,075,558 + +0.4
1,075,558 + -0.7
1,075,558 + +1.1
1,075,559 - +0.1
1,075,559 - +1.5
1,075,757 - -2.2
1,075,853 - Psest_0993 0.11 -0.2
1,076,057 - Psest_0993 0.24 -1.1
1,076,156 - Psest_0993 0.29 -0.2
1,076,296 + Psest_0993 0.38 -0.9
1,076,296 + Psest_0993 0.38 -1.3
1,076,296 + Psest_0993 0.38 -1.0
1,076,296 + Psest_0993 0.38 -0.4
1,076,297 - Psest_0993 0.38 -1.0
1,076,297 - Psest_0993 0.38 -1.7
1,076,305 + Psest_0993 0.38 +2.5
1,076,306 - Psest_0993 0.38 +0.2
1,076,320 + Psest_0993 0.39 -2.3
1,076,321 - Psest_0993 0.39 -0.3
1,076,420 + Psest_0993 0.45 -0.2
1,076,420 + Psest_0993 0.45 +0.3
1,076,420 + Psest_0993 0.45 -0.3
1,076,425 + Psest_0993 0.46 -1.6
1,076,425 + Psest_0993 0.46 -0.5
1,076,425 + Psest_0993 0.46 -0.6
1,076,425 + Psest_0993 0.46 +0.1
1,076,506 + Psest_0993 0.51 +0.8

Or see this region's nucleotide sequence