Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1548

Experiment: Benzethonium chloride 0.0125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1546 and Psest_1547 are separated by 32 nucleotidesPsest_1547 and Psest_1548 are separated by 125 nucleotidesPsest_1548 and Psest_1549 are separated by 64 nucleotides Psest_1546: Psest_1546 - NADH:flavin oxidoreductases, Old Yellow Enzyme family, at 1,646,598 to 1,647,707 _1546 Psest_1547: Psest_1547 - Uncharacterized protein conserved in bacteria, at 1,647,740 to 1,648,456 _1547 Psest_1548: Psest_1548 - peptide chain release factor 2, at 1,648,582 to 1,649,677 _1548 Psest_1549: Psest_1549 - Lysyl-tRNA synthetase (class II), at 1,649,742 to 1,651,244 _1549 Position (kb) 1648 1649 1650Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1647.648 kb on + strandat 1647.648 kb on + strandat 1647.648 kb on + strandat 1647.648 kb on + strandat 1647.648 kb on + strandat 1647.648 kb on + strandat 1647.649 kb on - strandat 1647.649 kb on - strandat 1647.649 kb on - strandat 1647.706 kb on - strandat 1647.706 kb on - strandat 1647.717 kb on - strandat 1647.983 kb on + strand, within Psest_1547at 1647.983 kb on + strand, within Psest_1547at 1647.984 kb on - strand, within Psest_1547at 1647.984 kb on - strand, within Psest_1547at 1648.017 kb on - strand, within Psest_1547at 1648.017 kb on - strand, within Psest_1547at 1648.319 kb on + strand, within Psest_1547at 1648.319 kb on + strand, within Psest_1547at 1648.319 kb on + strand, within Psest_1547at 1648.319 kb on + strand, within Psest_1547at 1648.319 kb on + strand, within Psest_1547at 1648.319 kb on + strand, within Psest_1547at 1648.320 kb on - strand, within Psest_1547at 1648.320 kb on - strand, within Psest_1547at 1648.320 kb on - strand, within Psest_1547at 1648.320 kb on - strand, within Psest_1547at 1648.320 kb on - strand, within Psest_1547at 1648.320 kb on - strand, within Psest_1547at 1648.320 kb on - strand, within Psest_1547at 1648.320 kb on - strand, within Psest_1547at 1648.320 kb on - strand, within Psest_1547at 1648.320 kb on - strand, within Psest_1547at 1648.437 kb on + strandat 1648.465 kb on + strandat 1648.466 kb on - strandat 1648.466 kb on - strandat 1648.537 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.0125 mM
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1,647,648 + +1.1
1,647,648 + -0.3
1,647,648 + +1.7
1,647,648 + -0.1
1,647,648 + +2.4
1,647,648 + +1.1
1,647,649 - +1.7
1,647,649 - -0.2
1,647,649 - -0.5
1,647,706 - +0.3
1,647,706 - +2.1
1,647,717 - +1.4
1,647,983 + Psest_1547 0.34 +1.7
1,647,983 + Psest_1547 0.34 -0.1
1,647,984 - Psest_1547 0.34 +0.2
1,647,984 - Psest_1547 0.34 -0.1
1,648,017 - Psest_1547 0.39 +0.0
1,648,017 - Psest_1547 0.39 +1.8
1,648,319 + Psest_1547 0.81 -1.4
1,648,319 + Psest_1547 0.81 -1.1
1,648,319 + Psest_1547 0.81 +0.7
1,648,319 + Psest_1547 0.81 -1.2
1,648,319 + Psest_1547 0.81 -1.1
1,648,319 + Psest_1547 0.81 -0.5
1,648,320 - Psest_1547 0.81 -0.2
1,648,320 - Psest_1547 0.81 -1.0
1,648,320 - Psest_1547 0.81 -1.3
1,648,320 - Psest_1547 0.81 -0.0
1,648,320 - Psest_1547 0.81 -1.9
1,648,320 - Psest_1547 0.81 -3.1
1,648,320 - Psest_1547 0.81 -0.5
1,648,320 - Psest_1547 0.81 -2.1
1,648,320 - Psest_1547 0.81 -0.1
1,648,320 - Psest_1547 0.81 -1.6
1,648,437 + -0.6
1,648,465 + +0.7
1,648,466 - -0.6
1,648,466 - -0.1
1,648,537 + -0.3

Or see this region's nucleotide sequence