Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1332

Experiment: Benzethonium chloride 0.0125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1329 and Psest_1330 overlap by 4 nucleotidesPsest_1330 and Psest_1331 are separated by 241 nucleotidesPsest_1331 and Psest_1332 are separated by 69 nucleotidesPsest_1332 and Psest_1333 are separated by 220 nucleotidesPsest_1333 and Psest_1334 are separated by 275 nucleotides Psest_1329: Psest_1329 - Alkylated DNA repair protein, at 1,431,998 to 1,432,615 _1329 Psest_1330: Psest_1330 - hypothetical protein, at 1,432,612 to 1,432,773 _1330 Psest_1331: Psest_1331 - hypothetical protein, at 1,433,015 to 1,433,125 _1331 Psest_1332: Psest_1332 - alpha-1,6-glucosidases, pullulanase-type, at 1,433,195 to 1,436,314 _1332 Psest_1333: Psest_1333 - Acyl dehydratase, at 1,436,535 to 1,437,005 _1333 Psest_1334: Psest_1334 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 1,437,281 to 1,438,969 _1334 Position (kb) 1433 1434 1435 1436 1437Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1432.217 kb on + strand, within Psest_1329at 1432.477 kb on - strand, within Psest_1329at 1432.477 kb on - strand, within Psest_1329at 1432.477 kb on - strand, within Psest_1329at 1432.799 kb on + strandat 1432.800 kb on - strandat 1432.800 kb on - strandat 1432.823 kb on + strandat 1432.824 kb on - strandat 1432.824 kb on - strandat 1432.867 kb on + strandat 1432.867 kb on + strandat 1432.867 kb on + strandat 1432.867 kb on + strandat 1432.870 kb on - strandat 1433.007 kb on + strandat 1433.027 kb on - strand, within Psest_1331at 1433.159 kb on - strandat 1433.695 kb on - strand, within Psest_1332at 1433.733 kb on + strand, within Psest_1332at 1433.733 kb on + strand, within Psest_1332at 1433.733 kb on + strand, within Psest_1332at 1433.877 kb on + strand, within Psest_1332at 1433.878 kb on - strand, within Psest_1332at 1433.922 kb on + strand, within Psest_1332at 1433.922 kb on + strand, within Psest_1332at 1433.923 kb on - strand, within Psest_1332at 1433.923 kb on - strand, within Psest_1332at 1433.923 kb on - strand, within Psest_1332at 1433.950 kb on + strand, within Psest_1332at 1433.950 kb on + strand, within Psest_1332at 1433.951 kb on - strand, within Psest_1332at 1433.951 kb on - strand, within Psest_1332at 1433.951 kb on - strand, within Psest_1332at 1433.974 kb on - strand, within Psest_1332at 1434.129 kb on + strand, within Psest_1332at 1434.130 kb on - strand, within Psest_1332at 1434.321 kb on + strand, within Psest_1332at 1434.321 kb on + strand, within Psest_1332at 1434.321 kb on + strand, within Psest_1332at 1434.321 kb on + strand, within Psest_1332at 1434.321 kb on + strand, within Psest_1332at 1434.321 kb on + strand, within Psest_1332at 1434.321 kb on + strand, within Psest_1332at 1434.322 kb on - strand, within Psest_1332at 1434.322 kb on - strand, within Psest_1332at 1434.380 kb on - strand, within Psest_1332at 1434.380 kb on - strand, within Psest_1332at 1434.380 kb on - strand, within Psest_1332at 1434.543 kb on + strand, within Psest_1332at 1434.543 kb on + strand, within Psest_1332at 1434.543 kb on + strand, within Psest_1332at 1434.543 kb on + strand, within Psest_1332at 1434.543 kb on + strand, within Psest_1332at 1434.543 kb on + strand, within Psest_1332at 1434.544 kb on - strand, within Psest_1332at 1434.609 kb on + strand, within Psest_1332at 1434.609 kb on + strand, within Psest_1332at 1434.609 kb on + strand, within Psest_1332at 1434.745 kb on - strand, within Psest_1332at 1434.784 kb on - strand, within Psest_1332at 1434.855 kb on + strand, within Psest_1332at 1435.056 kb on + strand, within Psest_1332at 1435.057 kb on - strand, within Psest_1332at 1435.057 kb on - strand, within Psest_1332at 1435.222 kb on - strand, within Psest_1332at 1435.321 kb on - strand, within Psest_1332at 1435.323 kb on + strand, within Psest_1332at 1435.323 kb on + strand, within Psest_1332at 1435.323 kb on + strand, within Psest_1332at 1435.324 kb on - strand, within Psest_1332at 1435.381 kb on + strand, within Psest_1332at 1435.512 kb on + strand, within Psest_1332at 1435.512 kb on + strand, within Psest_1332at 1435.512 kb on + strand, within Psest_1332at 1435.512 kb on + strand, within Psest_1332at 1435.512 kb on + strand, within Psest_1332at 1435.513 kb on - strand, within Psest_1332at 1435.584 kb on + strand, within Psest_1332at 1435.650 kb on + strand, within Psest_1332at 1435.744 kb on + strand, within Psest_1332at 1435.745 kb on - strand, within Psest_1332at 1435.786 kb on - strand, within Psest_1332at 1436.053 kb on - strandat 1436.053 kb on - strandat 1436.053 kb on - strandat 1436.169 kb on + strandat 1436.169 kb on + strandat 1436.193 kb on + strandat 1436.194 kb on - strandat 1436.194 kb on - strandat 1436.342 kb on + strandat 1436.342 kb on + strandat 1436.342 kb on + strandat 1436.342 kb on + strandat 1436.342 kb on + strandat 1436.343 kb on - strandat 1436.343 kb on - strandat 1436.343 kb on - strandat 1436.411 kb on - strandat 1436.987 kb on + strandat 1437.076 kb on + strandat 1437.109 kb on + strandat 1437.110 kb on - strandat 1437.220 kb on + strandat 1437.221 kb on - strandat 1437.265 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.0125 mM
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1,432,217 + Psest_1329 0.35 +2.9
1,432,477 - Psest_1329 0.78 -0.4
1,432,477 - Psest_1329 0.78 -1.8
1,432,477 - Psest_1329 0.78 -2.3
1,432,799 + -1.1
1,432,800 - +0.9
1,432,800 - +0.2
1,432,823 + +0.0
1,432,824 - -0.0
1,432,824 - +1.4
1,432,867 + +0.6
1,432,867 + +0.8
1,432,867 + +0.6
1,432,867 + -0.8
1,432,870 - +1.1
1,433,007 + -0.6
1,433,027 - Psest_1331 0.11 +0.2
1,433,159 - -1.1
1,433,695 - Psest_1332 0.16 +0.7
1,433,733 + Psest_1332 0.17 +0.2
1,433,733 + Psest_1332 0.17 +2.4
1,433,733 + Psest_1332 0.17 +0.4
1,433,877 + Psest_1332 0.22 -1.2
1,433,878 - Psest_1332 0.22 +0.0
1,433,922 + Psest_1332 0.23 +2.2
1,433,922 + Psest_1332 0.23 +0.0
1,433,923 - Psest_1332 0.23 -2.0
1,433,923 - Psest_1332 0.23 -0.7
1,433,923 - Psest_1332 0.23 +2.4
1,433,950 + Psest_1332 0.24 +1.8
1,433,950 + Psest_1332 0.24 +1.6
1,433,951 - Psest_1332 0.24 +0.2
1,433,951 - Psest_1332 0.24 -0.1
1,433,951 - Psest_1332 0.24 -1.2
1,433,974 - Psest_1332 0.25 +1.2
1,434,129 + Psest_1332 0.30 -2.8
1,434,130 - Psest_1332 0.30 +1.4
1,434,321 + Psest_1332 0.36 -0.1
1,434,321 + Psest_1332 0.36 +0.7
1,434,321 + Psest_1332 0.36 +0.6
1,434,321 + Psest_1332 0.36 +0.5
1,434,321 + Psest_1332 0.36 -0.1
1,434,321 + Psest_1332 0.36 +0.1
1,434,321 + Psest_1332 0.36 -0.2
1,434,322 - Psest_1332 0.36 -0.3
1,434,322 - Psest_1332 0.36 -0.6
1,434,380 - Psest_1332 0.38 +0.1
1,434,380 - Psest_1332 0.38 +0.7
1,434,380 - Psest_1332 0.38 -0.8
1,434,543 + Psest_1332 0.43 -1.4
1,434,543 + Psest_1332 0.43 +0.1
1,434,543 + Psest_1332 0.43 -0.1
1,434,543 + Psest_1332 0.43 -0.5
1,434,543 + Psest_1332 0.43 -0.5
1,434,543 + Psest_1332 0.43 +1.2
1,434,544 - Psest_1332 0.43 -1.1
1,434,609 + Psest_1332 0.45 +0.7
1,434,609 + Psest_1332 0.45 +1.3
1,434,609 + Psest_1332 0.45 -2.5
1,434,745 - Psest_1332 0.50 +0.5
1,434,784 - Psest_1332 0.51 +0.5
1,434,855 + Psest_1332 0.53 +0.5
1,435,056 + Psest_1332 0.60 +1.2
1,435,057 - Psest_1332 0.60 -0.0
1,435,057 - Psest_1332 0.60 +0.7
1,435,222 - Psest_1332 0.65 -1.6
1,435,321 - Psest_1332 0.68 -1.1
1,435,323 + Psest_1332 0.68 +2.0
1,435,323 + Psest_1332 0.68 -0.0
1,435,323 + Psest_1332 0.68 +0.2
1,435,324 - Psest_1332 0.68 +0.5
1,435,381 + Psest_1332 0.70 +0.5
1,435,512 + Psest_1332 0.74 +1.0
1,435,512 + Psest_1332 0.74 -1.1
1,435,512 + Psest_1332 0.74 +0.5
1,435,512 + Psest_1332 0.74 -1.2
1,435,512 + Psest_1332 0.74 +0.0
1,435,513 - Psest_1332 0.74 -0.4
1,435,584 + Psest_1332 0.77 +0.9
1,435,650 + Psest_1332 0.79 -1.9
1,435,744 + Psest_1332 0.82 -0.1
1,435,745 - Psest_1332 0.82 +0.5
1,435,786 - Psest_1332 0.83 +0.3
1,436,053 - +0.0
1,436,053 - -1.0
1,436,053 - +0.1
1,436,169 + -0.2
1,436,169 + -0.7
1,436,193 + -1.2
1,436,194 - -0.7
1,436,194 - -1.2
1,436,342 + -0.1
1,436,342 + +1.8
1,436,342 + -0.3
1,436,342 + +2.3
1,436,342 + +0.7
1,436,343 - -0.5
1,436,343 - +0.5
1,436,343 - -1.4
1,436,411 - +0.2
1,436,987 + +0.4
1,437,076 + -1.9
1,437,109 + +0.2
1,437,110 - -1.4
1,437,220 + +0.1
1,437,221 - +0.1
1,437,265 - -0.8

Or see this region's nucleotide sequence