Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2804

Experiment: 2-Furfuraldehyde 0.05 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2803 and Psest_2804 overlap by 58 nucleotidesPsest_2804 and Psest_2806 are separated by 533 nucleotides Psest_2803: Psest_2803 - NTP pyrophosphohydrolases including oxidative damage repair enzymes, at 2,993,964 to 2,994,884 _2803 Psest_2804: Psest_2804 - hypothetical protein, at 2,994,827 to 2,994,964 _2804 Psest_2806: Psest_2806 - RNA polymerase sigma factor RpoS, at 2,995,498 to 2,996,493 _2806 Position (kb) 2994 2995Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2993.890 kb on + strandat 2993.890 kb on + strandat 2993.890 kb on + strandat 2993.891 kb on - strandat 2993.891 kb on - strandat 2993.979 kb on + strandat 2994.024 kb on + strandat 2994.067 kb on + strand, within Psest_2803at 2994.067 kb on + strand, within Psest_2803at 2994.067 kb on + strand, within Psest_2803at 2994.067 kb on + strand, within Psest_2803at 2994.068 kb on - strand, within Psest_2803at 2994.068 kb on - strand, within Psest_2803at 2994.068 kb on - strand, within Psest_2803at 2994.068 kb on - strand, within Psest_2803at 2994.068 kb on - strand, within Psest_2803at 2994.068 kb on - strand, within Psest_2803at 2994.113 kb on + strand, within Psest_2803at 2994.113 kb on + strand, within Psest_2803at 2994.113 kb on + strand, within Psest_2803at 2994.113 kb on + strand, within Psest_2803at 2994.113 kb on + strand, within Psest_2803at 2994.332 kb on + strand, within Psest_2803at 2994.332 kb on + strand, within Psest_2803at 2994.332 kb on + strand, within Psest_2803at 2994.333 kb on - strand, within Psest_2803at 2994.333 kb on - strand, within Psest_2803at 2994.333 kb on - strand, within Psest_2803at 2994.333 kb on - strand, within Psest_2803at 2994.451 kb on + strand, within Psest_2803at 2994.456 kb on - strand, within Psest_2803at 2994.456 kb on - strand, within Psest_2803at 2994.643 kb on + strand, within Psest_2803at 2994.643 kb on + strand, within Psest_2803at 2994.643 kb on + strand, within Psest_2803at 2994.644 kb on - strand, within Psest_2803at 2994.644 kb on - strand, within Psest_2803at 2994.644 kb on - strand, within Psest_2803at 2994.644 kb on - strand, within Psest_2803at 2994.644 kb on - strand, within Psest_2803at 2994.947 kb on - strand, within Psest_2804at 2995.089 kb on + strandat 2995.089 kb on + strandat 2995.089 kb on + strandat 2995.089 kb on + strandat 2995.090 kb on - strandat 2995.090 kb on - strandat 2995.092 kb on - strandat 2995.236 kb on + strandat 2995.236 kb on + strandat 2995.322 kb on + strandat 2995.340 kb on + strandat 2995.340 kb on + strandat 2995.341 kb on - strandat 2995.351 kb on + strandat 2995.352 kb on - strandat 2995.352 kb on - strandat 2995.363 kb on + strandat 2995.363 kb on + strandat 2995.363 kb on + strandat 2995.493 kb on + strandat 2995.493 kb on + strandat 2995.493 kb on + strandat 2995.493 kb on + strandat 2995.493 kb on + strandat 2995.494 kb on - strandat 2995.494 kb on - strandat 2995.500 kb on - strandat 2995.500 kb on - strandat 2995.500 kb on - strandat 2995.616 kb on - strand, within Psest_2806at 2995.720 kb on - strand, within Psest_2806

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.05 vol%
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2,993,890 + -1.1
2,993,890 + +0.0
2,993,890 + -1.8
2,993,891 - -0.1
2,993,891 - -0.1
2,993,979 + +0.2
2,994,024 + +1.0
2,994,067 + Psest_2803 0.11 -1.3
2,994,067 + Psest_2803 0.11 -0.9
2,994,067 + Psest_2803 0.11 +0.2
2,994,067 + Psest_2803 0.11 -1.4
2,994,068 - Psest_2803 0.11 +0.9
2,994,068 - Psest_2803 0.11 -0.8
2,994,068 - Psest_2803 0.11 +1.9
2,994,068 - Psest_2803 0.11 -1.5
2,994,068 - Psest_2803 0.11 -1.6
2,994,068 - Psest_2803 0.11 +3.5
2,994,113 + Psest_2803 0.16 -0.3
2,994,113 + Psest_2803 0.16 +1.1
2,994,113 + Psest_2803 0.16 +1.4
2,994,113 + Psest_2803 0.16 -0.2
2,994,113 + Psest_2803 0.16 -0.1
2,994,332 + Psest_2803 0.40 -0.9
2,994,332 + Psest_2803 0.40 +2.9
2,994,332 + Psest_2803 0.40 +0.8
2,994,333 - Psest_2803 0.40 +0.5
2,994,333 - Psest_2803 0.40 -1.1
2,994,333 - Psest_2803 0.40 -1.1
2,994,333 - Psest_2803 0.40 +0.4
2,994,451 + Psest_2803 0.53 -1.6
2,994,456 - Psest_2803 0.53 +1.4
2,994,456 - Psest_2803 0.53 +1.1
2,994,643 + Psest_2803 0.74 -0.8
2,994,643 + Psest_2803 0.74 +1.7
2,994,643 + Psest_2803 0.74 +2.3
2,994,644 - Psest_2803 0.74 -2.6
2,994,644 - Psest_2803 0.74 -0.6
2,994,644 - Psest_2803 0.74 +0.7
2,994,644 - Psest_2803 0.74 -1.7
2,994,644 - Psest_2803 0.74 +1.3
2,994,947 - Psest_2804 0.87 -1.0
2,995,089 + +1.0
2,995,089 + -1.7
2,995,089 + +0.8
2,995,089 + +3.4
2,995,090 - -1.5
2,995,090 - +0.3
2,995,092 - -2.4
2,995,236 + -0.9
2,995,236 + +0.2
2,995,322 + +0.1
2,995,340 + -0.1
2,995,340 + -0.2
2,995,341 - +0.9
2,995,351 + +0.6
2,995,352 - -0.2
2,995,352 - -1.7
2,995,363 + -2.0
2,995,363 + +0.3
2,995,363 + +0.8
2,995,493 + +0.9
2,995,493 + -0.2
2,995,493 + +0.0
2,995,493 + +1.4
2,995,493 + -0.3
2,995,494 - -1.4
2,995,494 - -0.2
2,995,500 - +1.9
2,995,500 - +0.4
2,995,500 - -1.2
2,995,616 - Psest_2806 0.12 +0.8
2,995,720 - Psest_2806 0.22 -0.1

Or see this region's nucleotide sequence