Experiment: 2-Furfuraldehyde 0.05 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2635 and Psest_2636 are separated by 421 nucleotides Psest_2636 and Psest_2637 are separated by 112 nucleotides Psest_2637 and Psest_2638 are separated by 18 nucleotides
Psest_2635: Psest_2635 - choline/carnitine/betaine transport, at 2,817,353 to 2,819,419
_2635
Psest_2636: Psest_2636 - tryptophan synthase, beta subunit, at 2,819,841 to 2,821,049
_2636
Psest_2637: Psest_2637 - putative methyltransferase, YaeB/AF_0241 family, at 2,821,162 to 2,821,869
_2637
Psest_2638: Psest_2638 - Protein related to penicillin acylase, at 2,821,888 to 2,824,425
_2638
Position (kb)
2819
2820
2821
2822 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2818.845 kb on + strand, within Psest_2635 at 2818.845 kb on + strand, within Psest_2635 at 2818.845 kb on + strand, within Psest_2635 at 2818.845 kb on + strand, within Psest_2635 at 2818.846 kb on - strand, within Psest_2635 at 2818.846 kb on - strand, within Psest_2635 at 2818.918 kb on - strand, within Psest_2635 at 2818.918 kb on - strand, within Psest_2635 at 2818.944 kb on + strand, within Psest_2635 at 2818.945 kb on - strand, within Psest_2635 at 2819.211 kb on + strand, within Psest_2635 at 2819.212 kb on - strand, within Psest_2635 at 2819.212 kb on - strand, within Psest_2635 at 2819.232 kb on + strand at 2819.233 kb on - strand at 2819.233 kb on - strand at 2819.233 kb on - strand at 2819.267 kb on + strand at 2819.267 kb on + strand at 2819.268 kb on - strand at 2819.268 kb on - strand at 2819.268 kb on - strand at 2819.349 kb on + strand at 2819.350 kb on - strand at 2819.350 kb on - strand at 2819.426 kb on + strand at 2819.451 kb on - strand at 2819.470 kb on + strand at 2819.471 kb on - strand at 2819.471 kb on - strand at 2819.471 kb on - strand at 2819.471 kb on - strand at 2819.785 kb on + strand at 2819.785 kb on + strand at 2819.785 kb on + strand at 2819.785 kb on + strand at 2819.785 kb on + strand at 2819.785 kb on + strand at 2819.785 kb on + strand at 2819.786 kb on - strand at 2819.786 kb on - strand at 2819.786 kb on - strand at 2819.786 kb on - strand at 2819.786 kb on - strand at 2819.886 kb on + strand at 2819.887 kb on - strand at 2819.887 kb on - strand at 2820.019 kb on - strand, within Psest_2636 at 2820.019 kb on - strand, within Psest_2636 at 2820.019 kb on - strand, within Psest_2636 at 2820.087 kb on + strand, within Psest_2636 at 2820.087 kb on + strand, within Psest_2636 at 2820.087 kb on + strand, within Psest_2636 at 2820.088 kb on - strand, within Psest_2636 at 2820.088 kb on - strand, within Psest_2636 at 2820.088 kb on - strand, within Psest_2636 at 2820.088 kb on - strand, within Psest_2636 at 2820.088 kb on - strand, within Psest_2636 at 2820.088 kb on - strand, within Psest_2636 at 2820.380 kb on + strand, within Psest_2636 at 2820.397 kb on - strand, within Psest_2636 at 2820.418 kb on - strand, within Psest_2636 at 2820.418 kb on - strand, within Psest_2636 at 2820.418 kb on - strand, within Psest_2636 at 2820.418 kb on - strand, within Psest_2636 at 2820.418 kb on - strand, within Psest_2636 at 2820.418 kb on - strand, within Psest_2636 at 2820.418 kb on - strand, within Psest_2636 at 2820.424 kb on - strand, within Psest_2636 at 2820.724 kb on - strand, within Psest_2636 at 2820.724 kb on - strand, within Psest_2636 at 2820.724 kb on - strand, within Psest_2636 at 2820.813 kb on + strand, within Psest_2636 at 2820.814 kb on - strand, within Psest_2636 at 2820.814 kb on - strand, within Psest_2636 at 2820.840 kb on + strand, within Psest_2636 at 2820.840 kb on + strand, within Psest_2636 at 2820.841 kb on - strand, within Psest_2636 at 2820.841 kb on - strand, within Psest_2636 at 2820.841 kb on - strand, within Psest_2636 at 2820.980 kb on + strand at 2820.994 kb on + strand at 2820.994 kb on + strand at 2820.994 kb on + strand at 2820.994 kb on + strand at 2820.995 kb on - strand at 2820.995 kb on - strand at 2821.023 kb on + strand at 2821.047 kb on + strand at 2821.558 kb on + strand, within Psest_2637 at 2821.559 kb on - strand, within Psest_2637 at 2821.970 kb on + strand at 2821.970 kb on + strand at 2821.970 kb on + strand at 2821.971 kb on - strand at 2821.971 kb on - strand at 2821.971 kb on - strand at 2821.971 kb on - strand at 2821.971 kb on - strand at 2821.971 kb on - strand at 2821.971 kb on - strand at 2821.971 kb on - strand at 2822.044 kb on - strand at 2822.044 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.05 vol% remove 2,818,845 + Psest_2635 0.72 +1.5 2,818,845 + Psest_2635 0.72 -0.2 2,818,845 + Psest_2635 0.72 +1.1 2,818,845 + Psest_2635 0.72 -1.9 2,818,846 - Psest_2635 0.72 -2.4 2,818,846 - Psest_2635 0.72 +0.3 2,818,918 - Psest_2635 0.76 -1.3 2,818,918 - Psest_2635 0.76 +0.8 2,818,944 + Psest_2635 0.77 -0.7 2,818,945 - Psest_2635 0.77 +1.5 2,819,211 + Psest_2635 0.90 -0.2 2,819,212 - Psest_2635 0.90 +0.1 2,819,212 - Psest_2635 0.90 +0.9 2,819,232 + -2.1 2,819,233 - -0.8 2,819,233 - +0.2 2,819,233 - -0.5 2,819,267 + -0.3 2,819,267 + +2.0 2,819,268 - +0.9 2,819,268 - +1.0 2,819,268 - -0.3 2,819,349 + -3.9 2,819,350 - -1.1 2,819,350 - -0.5 2,819,426 + +0.7 2,819,451 - +1.1 2,819,470 + +1.9 2,819,471 - -3.1 2,819,471 - -3.2 2,819,471 - -0.2 2,819,471 - +0.2 2,819,785 + +0.9 2,819,785 + -0.4 2,819,785 + -1.4 2,819,785 + +2.7 2,819,785 + +2.0 2,819,785 + -1.7 2,819,785 + -1.1 2,819,786 - +1.7 2,819,786 - -1.4 2,819,786 - +0.6 2,819,786 - -0.9 2,819,786 - -2.1 2,819,886 + +0.3 2,819,887 - -0.1 2,819,887 - -0.1 2,820,019 - Psest_2636 0.15 +3.1 2,820,019 - Psest_2636 0.15 -0.5 2,820,019 - Psest_2636 0.15 +1.0 2,820,087 + Psest_2636 0.20 +1.7 2,820,087 + Psest_2636 0.20 +1.6 2,820,087 + Psest_2636 0.20 +1.0 2,820,088 - Psest_2636 0.20 +0.1 2,820,088 - Psest_2636 0.20 +0.4 2,820,088 - Psest_2636 0.20 +1.3 2,820,088 - Psest_2636 0.20 -0.2 2,820,088 - Psest_2636 0.20 +1.5 2,820,088 - Psest_2636 0.20 +0.3 2,820,380 + Psest_2636 0.45 -2.0 2,820,397 - Psest_2636 0.46 -0.7 2,820,418 - Psest_2636 0.48 +1.8 2,820,418 - Psest_2636 0.48 +0.6 2,820,418 - Psest_2636 0.48 +1.6 2,820,418 - Psest_2636 0.48 -1.0 2,820,418 - Psest_2636 0.48 +1.9 2,820,418 - Psest_2636 0.48 -1.2 2,820,418 - Psest_2636 0.48 +0.7 2,820,424 - Psest_2636 0.48 -0.8 2,820,724 - Psest_2636 0.73 +0.0 2,820,724 - Psest_2636 0.73 +2.6 2,820,724 - Psest_2636 0.73 +0.9 2,820,813 + Psest_2636 0.80 +0.9 2,820,814 - Psest_2636 0.80 +0.9 2,820,814 - Psest_2636 0.80 -1.4 2,820,840 + Psest_2636 0.83 -0.7 2,820,840 + Psest_2636 0.83 +0.0 2,820,841 - Psest_2636 0.83 -1.7 2,820,841 - Psest_2636 0.83 +1.1 2,820,841 - Psest_2636 0.83 +1.5 2,820,980 + +1.5 2,820,994 + +1.0 2,820,994 + -0.5 2,820,994 + -1.0 2,820,994 + +0.1 2,820,995 - +0.2 2,820,995 - -0.4 2,821,023 + +1.4 2,821,047 + +0.6 2,821,558 + Psest_2637 0.56 -0.3 2,821,559 - Psest_2637 0.56 +0.5 2,821,970 + +0.1 2,821,970 + +1.2 2,821,970 + +0.2 2,821,971 - +1.0 2,821,971 - +0.1 2,821,971 - -1.1 2,821,971 - -1.5 2,821,971 - +1.7 2,821,971 - +0.8 2,821,971 - -2.2 2,821,971 - +1.8 2,822,044 - +2.6 2,822,044 - -0.2
Or see this region's nucleotide sequence