Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2390

Experiment: 2-Furfuraldehyde 0.05 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2389 and Psest_2390 overlap by 4 nucleotidesPsest_2390 and Psest_2391 are separated by 85 nucleotidesPsest_2391 and Psest_2392 are separated by 173 nucleotides Psest_2389: Psest_2389 - Na+/melibiose symporter and related transporters, at 2,540,586 to 2,541,824 _2389 Psest_2390: Psest_2390 - hypothetical protein, at 2,541,821 to 2,542,348 _2390 Psest_2391: Psest_2391 - PAS domain S-box, at 2,542,434 to 2,542,880 _2391 Psest_2392: Psest_2392 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 2,543,054 to 2,545,714 _2392 Position (kb) 2541 2542 2543Strain fitness (log2 ratio) -2 -1 0 1 2at 2540.925 kb on + strand, within Psest_2389at 2540.925 kb on + strand, within Psest_2389at 2540.925 kb on + strand, within Psest_2389at 2540.925 kb on + strand, within Psest_2389at 2540.925 kb on + strand, within Psest_2389at 2540.925 kb on + strand, within Psest_2389at 2540.926 kb on - strand, within Psest_2389at 2540.926 kb on - strand, within Psest_2389at 2540.926 kb on - strand, within Psest_2389at 2540.955 kb on + strand, within Psest_2389at 2540.956 kb on - strand, within Psest_2389at 2540.956 kb on - strand, within Psest_2389at 2541.085 kb on - strand, within Psest_2389at 2541.258 kb on + strand, within Psest_2389at 2541.258 kb on + strand, within Psest_2389at 2541.363 kb on + strand, within Psest_2389at 2541.363 kb on + strand, within Psest_2389at 2541.363 kb on + strand, within Psest_2389at 2541.363 kb on + strand, within Psest_2389at 2541.363 kb on + strand, within Psest_2389at 2541.364 kb on - strand, within Psest_2389at 2541.364 kb on - strand, within Psest_2389at 2541.364 kb on - strand, within Psest_2389at 2541.364 kb on - strand, within Psest_2389at 2541.364 kb on - strand, within Psest_2389at 2541.364 kb on - strand, within Psest_2389at 2541.453 kb on - strand, within Psest_2389at 2541.621 kb on + strand, within Psest_2389at 2541.622 kb on - strand, within Psest_2389at 2541.744 kb on + strandat 2541.838 kb on - strandat 2541.838 kb on - strandat 2541.922 kb on + strand, within Psest_2390at 2541.922 kb on + strand, within Psest_2390at 2541.926 kb on + strand, within Psest_2390at 2541.927 kb on - strand, within Psest_2390at 2541.927 kb on - strand, within Psest_2390at 2541.927 kb on - strand, within Psest_2390at 2541.927 kb on - strand, within Psest_2390at 2541.927 kb on - strand, within Psest_2390at 2541.927 kb on - strand, within Psest_2390at 2541.927 kb on - strand, within Psest_2390at 2541.927 kb on - strand, within Psest_2390at 2541.927 kb on - strand, within Psest_2390at 2542.220 kb on + strand, within Psest_2390at 2542.221 kb on - strand, within Psest_2390at 2542.247 kb on + strand, within Psest_2390at 2542.247 kb on + strand, within Psest_2390at 2542.247 kb on + strand, within Psest_2390at 2542.248 kb on - strand, within Psest_2390at 2542.248 kb on - strand, within Psest_2390at 2542.248 kb on - strand, within Psest_2390at 2542.248 kb on - strand, within Psest_2390at 2542.248 kb on - strand, within Psest_2390at 2542.248 kb on - strand, within Psest_2390at 2542.398 kb on + strandat 2542.527 kb on + strand, within Psest_2391at 2542.528 kb on - strand, within Psest_2391at 2542.689 kb on + strand, within Psest_2391at 2542.689 kb on + strand, within Psest_2391at 2542.689 kb on + strand, within Psest_2391at 2542.690 kb on - strand, within Psest_2391at 2542.764 kb on + strand, within Psest_2391at 2542.764 kb on + strand, within Psest_2391at 2542.764 kb on + strand, within Psest_2391at 2542.765 kb on - strand, within Psest_2391at 2542.765 kb on - strand, within Psest_2391at 2542.902 kb on + strandat 2542.903 kb on - strandat 2542.954 kb on + strandat 2542.954 kb on + strandat 2542.954 kb on + strandat 2542.955 kb on - strandat 2542.960 kb on - strandat 2542.960 kb on - strandat 2543.263 kb on + strandat 2543.293 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.05 vol%
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2,540,925 + Psest_2389 0.27 +0.3
2,540,925 + Psest_2389 0.27 +1.6
2,540,925 + Psest_2389 0.27 -1.0
2,540,925 + Psest_2389 0.27 -2.0
2,540,925 + Psest_2389 0.27 +0.6
2,540,925 + Psest_2389 0.27 +0.3
2,540,926 - Psest_2389 0.27 -0.0
2,540,926 - Psest_2389 0.27 -0.5
2,540,926 - Psest_2389 0.27 +0.3
2,540,955 + Psest_2389 0.30 -1.8
2,540,956 - Psest_2389 0.30 -0.7
2,540,956 - Psest_2389 0.30 +0.2
2,541,085 - Psest_2389 0.40 +1.4
2,541,258 + Psest_2389 0.54 -0.4
2,541,258 + Psest_2389 0.54 +0.5
2,541,363 + Psest_2389 0.63 -2.4
2,541,363 + Psest_2389 0.63 +0.2
2,541,363 + Psest_2389 0.63 -2.4
2,541,363 + Psest_2389 0.63 +1.1
2,541,363 + Psest_2389 0.63 -0.5
2,541,364 - Psest_2389 0.63 +0.0
2,541,364 - Psest_2389 0.63 +2.0
2,541,364 - Psest_2389 0.63 -0.5
2,541,364 - Psest_2389 0.63 -0.2
2,541,364 - Psest_2389 0.63 -0.9
2,541,364 - Psest_2389 0.63 -2.6
2,541,453 - Psest_2389 0.70 -0.4
2,541,621 + Psest_2389 0.84 +1.4
2,541,622 - Psest_2389 0.84 -0.6
2,541,744 + +1.3
2,541,838 - -1.2
2,541,838 - +1.2
2,541,922 + Psest_2390 0.19 +2.1
2,541,922 + Psest_2390 0.19 +0.1
2,541,926 + Psest_2390 0.20 -1.0
2,541,927 - Psest_2390 0.20 +1.7
2,541,927 - Psest_2390 0.20 +0.1
2,541,927 - Psest_2390 0.20 +0.5
2,541,927 - Psest_2390 0.20 +0.4
2,541,927 - Psest_2390 0.20 -1.2
2,541,927 - Psest_2390 0.20 +1.6
2,541,927 - Psest_2390 0.20 -0.0
2,541,927 - Psest_2390 0.20 -0.3
2,541,927 - Psest_2390 0.20 +1.4
2,542,220 + Psest_2390 0.76 -0.1
2,542,221 - Psest_2390 0.76 -1.8
2,542,247 + Psest_2390 0.81 +0.9
2,542,247 + Psest_2390 0.81 -1.4
2,542,247 + Psest_2390 0.81 +0.6
2,542,248 - Psest_2390 0.81 +1.0
2,542,248 - Psest_2390 0.81 -1.7
2,542,248 - Psest_2390 0.81 -0.8
2,542,248 - Psest_2390 0.81 +0.8
2,542,248 - Psest_2390 0.81 -1.9
2,542,248 - Psest_2390 0.81 -0.1
2,542,398 + -2.2
2,542,527 + Psest_2391 0.21 -1.0
2,542,528 - Psest_2391 0.21 +0.6
2,542,689 + Psest_2391 0.57 +0.4
2,542,689 + Psest_2391 0.57 +0.2
2,542,689 + Psest_2391 0.57 +1.6
2,542,690 - Psest_2391 0.57 +0.9
2,542,764 + Psest_2391 0.74 -1.7
2,542,764 + Psest_2391 0.74 +2.2
2,542,764 + Psest_2391 0.74 +1.3
2,542,765 - Psest_2391 0.74 -0.6
2,542,765 - Psest_2391 0.74 +1.2
2,542,902 + +1.1
2,542,903 - -0.4
2,542,954 + -0.4
2,542,954 + +1.1
2,542,954 + -1.9
2,542,955 - +0.6
2,542,960 - -0.1
2,542,960 - -0.7
2,543,263 + -0.4
2,543,293 - -1.2

Or see this region's nucleotide sequence