Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1004

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
1,087,990	+		Psest_1002	0.76	-2.9
1,087,991	-		Psest_1002	0.76	-1.9
1,087,991	-		Psest_1002	0.76	-0.7
1,088,101	+		Psest_1002	0.88	+1.0
1,088,102	-		Psest_1002	0.88	-0.6
1,088,102	-		Psest_1002	0.88	+1.6
1,088,686	-		Psest_1003	0.87	-1.1
1,088,686	-		Psest_1003	0.87	-1.1
1,088,901	-				-0.7
1,088,947	+				-2.2
1,088,947	+				-1.0
1,088,947	+				-0.2
1,088,947	+				-3.3
1,088,947	+				-0.5
1,088,947	+				-0.9
1,088,947	+				-1.4
1,088,947	+				-1.9
1,088,948	-				+0.2
1,088,948	-				+3.1
1,088,948	-				+1.0
1,088,948	-				-0.4
1,089,128	-		Psest_1004	0.16	+1.7
1,089,130	-		Psest_1004	0.17	+1.2
1,089,197	+		Psest_1004	0.22	+1.4
1,089,197	+		Psest_1004	0.22	-1.1
1,089,197	+		Psest_1004	0.22	+1.2
1,089,198	-		Psest_1004	0.22	-0.7
1,089,198	-		Psest_1004	0.22	+0.2
1,089,198	-		Psest_1004	0.22	+2.0
1,089,198	-		Psest_1004	0.22	+1.9
1,089,202	-		Psest_1004	0.23	-0.3
1,089,202	-		Psest_1004	0.23	+3.4
1,089,553	+		Psest_1004	0.53	-1.1
1,089,553	+		Psest_1004	0.53	+0.1
1,089,553	+		Psest_1004	0.53	+0.1
1,089,553	+		Psest_1004	0.53	-0.4
1,089,554	-		Psest_1004	0.53	+2.2
1,089,554	-		Psest_1004	0.53	+0.0
1,089,554	-		Psest_1004	0.53	+4.6
1,089,554	-		Psest_1004	0.53	+0.2
1,089,569	-		Psest_1004	0.54	-0.4
1,089,600	-		Psest_1004	0.57	+0.9
1,089,637	+		Psest_1004	0.60	-0.3
1,089,637	+		Psest_1004	0.60	-1.1
1,089,637	+		Psest_1004	0.60	+0.6
1,089,638	-		Psest_1004	0.60	+2.7
1,089,638	-		Psest_1004	0.60	+2.4
1,089,638	-		Psest_1004	0.60	-2.1
1,089,724	+		Psest_1004	0.67	+1.0
1,089,725	-		Psest_1004	0.67	-0.0
1,089,725	-		Psest_1004	0.67	-1.2
1,089,867	+		Psest_1004	0.79	-0.9
1,089,896	-		Psest_1004	0.82	+0.3
1,089,896	-		Psest_1004	0.82	+1.1
1,089,896	-		Psest_1004	0.82	+1.1
1,089,902	-		Psest_1004	0.82	+0.0
1,089,902	-		Psest_1004	0.82	-1.6
1,090,034	-				-0.9
1,090,034	-				+0.7
1,090,152	+				+1.3
1,090,443	+		Psest_1005	0.47	-1.4
1,090,444	-		Psest_1005	0.48	+0.0
1,090,444	-		Psest_1005	0.48	-1.0
1,090,444	-		Psest_1005	0.48	+0.4
1,090,444	-		Psest_1005	0.48	+1.0
1,090,444	-		Psest_1005	0.48	-1.2
1,090,642	-		Psest_1005	0.76	-1.5
1,090,642	-		Psest_1005	0.76	-1.0
1,090,699	+		Psest_1005	0.84	+0.9
1,090,699	+		Psest_1005	0.84	-1.6
1,090,700	-		Psest_1005	0.84	-0.9
1,090,700	-		Psest_1005	0.84	+0.2
1,090,701	+		Psest_1005	0.84	+1.2
1,090,943	-				+1.9