Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0872

Experiment: 5-Hydroxymethylfurfural 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0871 and Psest_0872 are separated by 174 nucleotidesPsest_0872 and Psest_0873 overlap by 1 nucleotides Psest_0871: Psest_0871 - maltose ABC transporter, ATPase component MalK (from data), at 947,237 to 948,352 _0871 Psest_0872: Psest_0872 - Helix-turn-helix., at 948,527 to 948,844 _0872 Psest_0873: Psest_0873 - HipA N-terminal domain, at 948,844 to 950,163 _0873 Position (kb) 948 949Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 947.801 kb on + strand, within Psest_0871at 947.801 kb on + strand, within Psest_0871at 947.801 kb on + strand, within Psest_0871at 947.801 kb on + strand, within Psest_0871at 947.801 kb on + strand, within Psest_0871at 947.801 kb on + strand, within Psest_0871at 947.802 kb on - strand, within Psest_0871at 947.802 kb on - strand, within Psest_0871at 947.802 kb on - strand, within Psest_0871at 947.802 kb on - strand, within Psest_0871at 947.802 kb on - strand, within Psest_0871at 947.802 kb on - strand, within Psest_0871at 947.802 kb on - strand, within Psest_0871at 947.802 kb on - strand, within Psest_0871at 947.901 kb on - strand, within Psest_0871at 948.167 kb on + strand, within Psest_0871at 948.168 kb on - strand, within Psest_0871at 948.179 kb on + strand, within Psest_0871at 948.179 kb on + strand, within Psest_0871at 948.179 kb on + strand, within Psest_0871at 948.179 kb on + strand, within Psest_0871at 948.180 kb on - strand, within Psest_0871at 948.180 kb on - strand, within Psest_0871at 948.180 kb on - strand, within Psest_0871at 948.344 kb on + strandat 948.344 kb on + strandat 948.344 kb on + strandat 948.345 kb on - strandat 948.345 kb on - strandat 948.345 kb on - strandat 948.345 kb on - strandat 948.778 kb on + strand, within Psest_0872at 948.778 kb on + strand, within Psest_0872at 948.911 kb on + strandat 948.965 kb on + strandat 948.965 kb on + strandat 948.965 kb on + strandat 948.966 kb on - strandat 948.966 kb on - strandat 948.966 kb on - strandat 949.302 kb on + strand, within Psest_0873at 949.302 kb on + strand, within Psest_0873at 949.302 kb on + strand, within Psest_0873at 949.303 kb on - strand, within Psest_0873at 949.303 kb on - strand, within Psest_0873at 949.303 kb on - strand, within Psest_0873at 949.303 kb on - strand, within Psest_0873at 949.318 kb on + strand, within Psest_0873at 949.318 kb on + strand, within Psest_0873at 949.318 kb on + strand, within Psest_0873at 949.319 kb on - strand, within Psest_0873at 949.319 kb on - strand, within Psest_0873at 949.319 kb on - strand, within Psest_0873at 949.353 kb on + strand, within Psest_0873at 949.353 kb on + strand, within Psest_0873at 949.354 kb on - strand, within Psest_0873at 949.354 kb on - strand, within Psest_0873at 949.369 kb on - strand, within Psest_0873at 949.452 kb on - strand, within Psest_0873at 949.483 kb on + strand, within Psest_0873at 949.483 kb on + strand, within Psest_0873at 949.483 kb on + strand, within Psest_0873at 949.483 kb on + strand, within Psest_0873at 949.483 kb on + strand, within Psest_0873at 949.483 kb on + strand, within Psest_0873at 949.483 kb on + strand, within Psest_0873at 949.483 kb on + strand, within Psest_0873at 949.483 kb on + strand, within Psest_0873at 949.483 kb on + strand, within Psest_0873at 949.483 kb on + strand, within Psest_0873at 949.483 kb on + strand, within Psest_0873at 949.483 kb on + strand, within Psest_0873at 949.484 kb on - strand, within Psest_0873at 949.484 kb on - strand, within Psest_0873at 949.484 kb on - strand, within Psest_0873at 949.484 kb on - strand, within Psest_0873at 949.484 kb on - strand, within Psest_0873at 949.484 kb on - strand, within Psest_0873at 949.484 kb on - strand, within Psest_0873at 949.501 kb on + strand, within Psest_0873at 949.501 kb on + strand, within Psest_0873at 949.502 kb on - strand, within Psest_0873at 949.502 kb on - strand, within Psest_0873at 949.561 kb on - strand, within Psest_0873at 949.597 kb on + strand, within Psest_0873at 949.598 kb on - strand, within Psest_0873at 949.598 kb on - strand, within Psest_0873at 949.598 kb on - strand, within Psest_0873at 949.598 kb on - strand, within Psest_0873at 949.603 kb on + strand, within Psest_0873at 949.603 kb on + strand, within Psest_0873at 949.603 kb on + strand, within Psest_0873at 949.603 kb on + strand, within Psest_0873at 949.603 kb on + strand, within Psest_0873at 949.604 kb on - strand, within Psest_0873at 949.604 kb on - strand, within Psest_0873at 949.604 kb on - strand, within Psest_0873at 949.604 kb on - strand, within Psest_0873at 949.769 kb on + strand, within Psest_0873at 949.783 kb on + strand, within Psest_0873at 949.783 kb on + strand, within Psest_0873at 949.784 kb on - strand, within Psest_0873at 949.784 kb on - strand, within Psest_0873at 949.784 kb on - strand, within Psest_0873

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM
remove
947,801 + Psest_0871 0.51 -0.1
947,801 + Psest_0871 0.51 -0.6
947,801 + Psest_0871 0.51 -0.3
947,801 + Psest_0871 0.51 +0.7
947,801 + Psest_0871 0.51 -1.0
947,801 + Psest_0871 0.51 -1.2
947,802 - Psest_0871 0.51 +0.0
947,802 - Psest_0871 0.51 +1.5
947,802 - Psest_0871 0.51 +0.2
947,802 - Psest_0871 0.51 +2.3
947,802 - Psest_0871 0.51 +1.3
947,802 - Psest_0871 0.51 +0.8
947,802 - Psest_0871 0.51 +1.9
947,802 - Psest_0871 0.51 -0.7
947,901 - Psest_0871 0.59 +0.8
948,167 + Psest_0871 0.83 -2.4
948,168 - Psest_0871 0.83 -0.2
948,179 + Psest_0871 0.84 +0.6
948,179 + Psest_0871 0.84 -3.0
948,179 + Psest_0871 0.84 -0.4
948,179 + Psest_0871 0.84 -0.6
948,180 - Psest_0871 0.84 +1.4
948,180 - Psest_0871 0.84 +0.6
948,180 - Psest_0871 0.84 -0.8
948,344 + +1.0
948,344 + +2.1
948,344 + +0.9
948,345 - +0.3
948,345 - +0.2
948,345 - -0.3
948,345 - +1.5
948,778 + Psest_0872 0.79 +0.3
948,778 + Psest_0872 0.79 -1.9
948,911 + +0.8
948,965 + +0.0
948,965 + +1.1
948,965 + -1.6
948,966 - +0.0
948,966 - +1.9
948,966 - -0.9
949,302 + Psest_0873 0.35 -0.1
949,302 + Psest_0873 0.35 -1.2
949,302 + Psest_0873 0.35 +0.0
949,303 - Psest_0873 0.35 +0.0
949,303 - Psest_0873 0.35 +1.4
949,303 - Psest_0873 0.35 -0.1
949,303 - Psest_0873 0.35 -0.7
949,318 + Psest_0873 0.36 -1.1
949,318 + Psest_0873 0.36 +0.1
949,318 + Psest_0873 0.36 -1.1
949,319 - Psest_0873 0.36 -0.6
949,319 - Psest_0873 0.36 -0.7
949,319 - Psest_0873 0.36 +1.2
949,353 + Psest_0873 0.39 +0.3
949,353 + Psest_0873 0.39 +0.4
949,354 - Psest_0873 0.39 +0.3
949,354 - Psest_0873 0.39 -1.3
949,369 - Psest_0873 0.40 +2.1
949,452 - Psest_0873 0.46 -0.7
949,483 + Psest_0873 0.48 -2.1
949,483 + Psest_0873 0.48 +1.2
949,483 + Psest_0873 0.48 -0.9
949,483 + Psest_0873 0.48 +0.8
949,483 + Psest_0873 0.48 -1.8
949,483 + Psest_0873 0.48 -0.6
949,483 + Psest_0873 0.48 +0.2
949,483 + Psest_0873 0.48 -0.4
949,483 + Psest_0873 0.48 +0.7
949,483 + Psest_0873 0.48 +0.2
949,483 + Psest_0873 0.48 +0.0
949,483 + Psest_0873 0.48 +1.6
949,483 + Psest_0873 0.48 +2.1
949,484 - Psest_0873 0.48 -1.0
949,484 - Psest_0873 0.48 -1.0
949,484 - Psest_0873 0.48 -1.0
949,484 - Psest_0873 0.48 -1.2
949,484 - Psest_0873 0.48 +1.8
949,484 - Psest_0873 0.48 +0.9
949,484 - Psest_0873 0.48 -0.6
949,501 + Psest_0873 0.50 +0.3
949,501 + Psest_0873 0.50 +0.4
949,502 - Psest_0873 0.50 -0.3
949,502 - Psest_0873 0.50 +1.5
949,561 - Psest_0873 0.54 +0.4
949,597 + Psest_0873 0.57 -2.1
949,598 - Psest_0873 0.57 +0.1
949,598 - Psest_0873 0.57 +0.0
949,598 - Psest_0873 0.57 -0.5
949,598 - Psest_0873 0.57 +0.3
949,603 + Psest_0873 0.57 -0.6
949,603 + Psest_0873 0.57 +0.8
949,603 + Psest_0873 0.57 -2.0
949,603 + Psest_0873 0.57 +1.1
949,603 + Psest_0873 0.57 +0.3
949,604 - Psest_0873 0.58 -0.8
949,604 - Psest_0873 0.58 +1.9
949,604 - Psest_0873 0.58 -0.3
949,604 - Psest_0873 0.58 +2.0
949,769 + Psest_0873 0.70 -3.1
949,783 + Psest_0873 0.71 +1.3
949,783 + Psest_0873 0.71 -0.3
949,784 - Psest_0873 0.71 -2.2
949,784 - Psest_0873 0.71 +0.9
949,784 - Psest_0873 0.71 -0.1

Or see this region's nucleotide sequence